X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2FJabawsCalcWorker.java;h=3d3e6cb681b777a28c5a46e19ee2d61061437d3f;hb=HEAD;hp=e01c648a12f2b7ca67eb1c8fec2f28abd9a225b0;hpb=4b31a57dbc12d26b92c31186ff3b953f0dd8dfcc;p=jalview.git

diff --git a/src/jalview/ws/jws2/JabawsCalcWorker.java b/src/jalview/ws/jws2/JabawsCalcWorker.java
index e01c648..3d3e6cb 100644
--- a/src/jalview/ws/jws2/JabawsCalcWorker.java
+++ b/src/jalview/ws/jws2/JabawsCalcWorker.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -115,7 +115,8 @@ public abstract class JabawsCalcWorker extends AbstractJabaCalcWorker
         rslt = aaservice.customAnalize(seqs, getJabaArguments());
       } catch (WrongParameterException x)
       {
-        throw new JobSubmissionException(MessageManager.getString("exception.jobsubmission_invalid_params_set"), x);
+        throw new JobSubmissionException(MessageManager.getString(
+                "exception.jobsubmission_invalid_params_set"), x);
 
       }
     }
@@ -141,9 +142,9 @@ public abstract class JabawsCalcWorker extends AbstractJabaCalcWorker
           List<AlignmentAnnotation> ourAnnot, String typeName,
           String calcId, SequenceI dseq, int base, Score scr)
   {
-    System.out.println("Creating annotation on dseq:" + dseq.getStart()
-            + " base is " + base + " and length=" + dseq.getLength()
-            + " == " + scr.getScores().size());
+    jalview.bin.Console.outPrintln("Creating annotation on dseq:"
+            + dseq.getStart() + " base is " + base + " and length="
+            + dseq.getLength() + " == " + scr.getScores().size());
     // AlignmentAnnotation annotation = new AlignmentAnnotation(
     // scr.getMethod(), typeName, new Annotation[]
     // {}, 0, -1, AlignmentAnnotation.LINE_GRAPH);