X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2FJws2Discoverer.java;h=0782d57dba94f575044570955770a7de87bcf303;hb=dfa04e77181fccfa6229ffef1591fc9c622d9b39;hp=cb700bce6e12c25f77d58fe867ba5bd4b41fbd89;hpb=f8164ef6f241c5eb111c413fb8594e67b49ce671;p=jalview.git

diff --git a/src/jalview/ws/jws2/Jws2Discoverer.java b/src/jalview/ws/jws2/Jws2Discoverer.java
index cb700bc..0782d57 100644
--- a/src/jalview/ws/jws2/Jws2Discoverer.java
+++ b/src/jalview/ws/jws2/Jws2Discoverer.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -14,6 +14,7 @@
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.ws.jws2;
 
@@ -38,6 +39,7 @@ import java.util.HashSet;
 import java.util.Hashtable;
 import java.util.List;
 import java.util.Map;
+import java.util.Set;
 import java.util.StringTokenizer;
 import java.util.Vector;
 
@@ -105,6 +107,7 @@ public class Jws2Discoverer implements Runnable, WSMenuEntryProviderI
 
   public void run()
   {
+
     if (running && oldthread != null && oldthread.isAlive())
     {
       if (!aborted)
@@ -127,6 +130,13 @@ public class Jws2Discoverer implements Runnable, WSMenuEntryProviderI
     }
     running = true;
     
+    // first set up exclusion list if needed
+    final Set<String> ignoredServices = new HashSet<String>();
+    for (String ignored:jalview.bin.Cache.getDefault("IGNORED_JABAWS_SERVICETYPES", Services.JpredWS.toString()).split("\\|"))
+    {
+      ignoredServices.add(ignored);
+    }
+
     
     changeSupport.firePropertyChange("services", services, new Vector());
     oldthread = Thread.currentThread();
@@ -171,7 +181,10 @@ public class Jws2Discoverer implements Runnable, WSMenuEntryProviderI
         // for all possible services
         for (Services sv : squery.JABAWS2SERVERS)
         {
-          svctypes.add(sv.toString());
+          if (!ignoredServices.contains(sv.toString()))
+          {
+            svctypes.add(sv.toString());
+          }
         }
 
       }
@@ -191,7 +204,9 @@ public class Jws2Discoverer implements Runnable, WSMenuEntryProviderI
       ;
       for (JabaWsServerQuery squery : qrys)
       {
-        finished = finished && !squery.isRunning();
+        if (squery.isRunning()){
+          finished=false;
+        }
       }
       if (aborted)
       {
@@ -224,7 +239,10 @@ public class Jws2Discoverer implements Runnable, WSMenuEntryProviderI
         services = new Vector<Jws2Instance>();
         for (Jws2Instance svc : svcs)
         {
-          services.add(svc);
+          if (!ignoredServices.contains(svc.serviceType))
+          {
+            services.add(svc);
+          }
         }
       }
     }