"
- + JvSwingUtils.wrapTooltip(""
- + (preset.isModifiable() ? "User Preset"
- : "Service Preset") + "
"
- + preset.getDescription() + "
" - + JvSwingUtils.wrapTooltip(AAconToggleTooltip + "
") - + ""); - aaConEnabled.addActionListener(new ActionListener() - { - @Override - public void actionPerformed(ActionEvent arg0) - { - List" - + JvSwingUtils.wrapTooltip(AAeditSettingsTooltip + "
") - + ""); - modifyParams.addActionListener(new ActionListener() - { - - @Override - public void actionPerformed(ActionEvent arg0) - { - showAAConAnnotationSettingsFor(alignFrame); - } - }); - wsmenu.add(modifyParams); - - } - } - - private static void showAAConAnnotationSettingsFor(AlignFrame alignFrame) - { - /* - * preferred settings Whether AACon is automatically recalculated Which - * AACon server to use What parameters to use - */ - // could actually do a class search for this too - AAConSettings fave = (AAConSettings) alignFrame.getViewport() - .getCalcIdSettingsFor(AAConCalcId); - if (fave == null) - { - fave = createDefaultAAConSettings(); - } - new SequenceAnnotationWSClient(fave, alignFrame, true); - - } - - private static void buildCurrentAAConWorkerFor(AlignFrame alignFrame) - { - buildCurrentAAConWorkerFor(alignFrame, null); - } - - private static void buildCurrentAAConWorkerFor(AlignFrame alignFrame, - Jws2Instance service) - { - /* - * preferred settings Whether AACon is automatically recalculated Which - * AACon server to use What parameters to use - */ - AAConSettings fave = (AAConSettings) alignFrame.getViewport() - .getCalcIdSettingsFor(AAConCalcId); - if (fave == null) - { - fave = createDefaultAAConSettings(service); - } - else - { - if (service != null - && !fave.getService().hosturl.equals(service.hosturl)) - { - Cache.log.debug("Changing AACon service to " + service.hosturl - + " from " + fave.getService().hosturl); - fave.setService(service); - } - } - new SequenceAnnotationWSClient(fave, alignFrame, false); - } - - private static AAConSettings createDefaultAAConSettings() - { - return createDefaultAAConSettings(null); - } - - private static AAConSettings createDefaultAAConSettings( - Jws2Instance service) - { - if (service != null) - { - if (!service.serviceType.toString().equals( - compbio.ws.client.Services.AAConWS.toString())) - { - Cache.log - .warn("Ignoring invalid preferred service for AACon calculations (service type was " - + service.serviceType + ")"); - service = null; - } - else - { - // check service is actually in the list of currently avaialable - // services - if (!Jws2Discoverer.getDiscoverer().getServices().contains(service)) - { - // it isn't .. - service = null; - } - } - } - if (service == null) - { - // get the default service for AACon - service = Jws2Discoverer.getDiscoverer().getPreferredServiceFor(null, - compbio.ws.client.Services.AAConWS.toString()); - } - if (service == null) - { - // TODO raise dialog box explaining error, and/or open the JABA - // preferences menu. - throw new Error("No AACon service found."); - } - return new AAConSettings(true, service, null, null); - } - - private static void removeCurrentAAConWorkerFor(AlignFrame alignFrame) - { - alignFrame.getViewport().getCalcManager() - .removeRegisteredWorkersOfClass(AAConClient.class); - } }