"
- + JvSwingUtils.wrapTooltip(""
- + (preset.isModifiable() ? "User Preset"
- : "Service Preset") + "
"
- + preset.getDescription() + "
" - + JvSwingUtils.wrapTooltip(AAconsToggleTooltip + "
") - + ""); - aaConsEnabled.addActionListener(new ActionListener() - { - @Override - public void actionPerformed(ActionEvent arg0) - { - // aaConsEnabled.setSelected(!aaConsEnabled.isSelected()); - List" - + JvSwingUtils.wrapTooltip(AAeditSettingsTooltip + "
") - + ""); - modifyParams.addActionListener(new ActionListener() - { - - @Override - public void actionPerformed(ActionEvent arg0) - { - showAAConsAnnotationSettingsFor(alignFrame); - } - }); - wsmenu.add(modifyParams); - - } - } - - private static void showAAConsAnnotationSettingsFor(AlignFrame alignFrame) - { - /* - * preferred settings Whether AACons is automatically recalculated Which - * AACons server to use What parameters to use - */ - // could actually do a class search for this too - AAConsSettings fave = (AAConsSettings) alignFrame.getViewport() - .getCalcIdSettingsFor(AAConsCalcId); - if (fave == null) - { - fave = createDefaultAAConsSettings(); - } - new SequenceAnnotationWSClient(fave, alignFrame, true); - - } - - private static void buildCurrentAAConsWorkerFor(AlignFrame alignFrame) - { - buildCurrentAAConsWorkerFor(alignFrame, null); - } - - private static void buildCurrentAAConsWorkerFor(AlignFrame alignFrame, - Jws2Instance service) - { - /* - * preferred settings Whether AACons is automatically recalculated Which - * AACons server to use What parameters to use - */ - AAConsSettings fave = (AAConsSettings) alignFrame.getViewport() - .getCalcIdSettingsFor(AAConsCalcId); - if (fave == null) - { - fave = createDefaultAAConsSettings(service); - } - else - { - if (service != null - && !fave.getService().hosturl.equals(service.hosturl)) - { - Cache.log.debug("Changing AACons service to " + service.hosturl - + " from " + fave.getService().hosturl); - fave.setService(service); - } - } - new SequenceAnnotationWSClient(fave, alignFrame, false); - } - - private static AAConsSettings createDefaultAAConsSettings() - { - return createDefaultAAConsSettings(null); - } - - private static AAConsSettings createDefaultAAConsSettings( - Jws2Instance service) - { - if (service != null) - { - if (!service.serviceType.toString().equals( - compbio.ws.client.Services.AAConWS.toString())) - { - Cache.log - .warn("Ignoring invalid preferred service for AACons calculations (service type was " - + service.serviceType + ")"); - service = null; - } - else - { - // check service is actually in the list of currently avaialable - // services - if (!Jws2Discoverer.getDiscoverer().getServices().contains(service)) - { - // it isn't .. - service = null; - } + }); + annotservice.setToolTipText( + JvSwingUtils.wrapTooltip(true, MessageManager.formatMessage( + "label.view_service_doc_url", new String[] + { service.docUrl, service.docUrl }))); + wsmenu.add(annotservice); } } - if (service == null) - { - // get the default service for AACons - service = Jws2Discoverer.getDiscoverer().getPreferredServiceFor(null, - compbio.ws.client.Services.AAConWS.toString()); - /* - * for (Jws2Instance sv : Jws2Discoverer.getDiscoverer().getServices()) { - * if (sv.serviceType.toString().equals( - * compbio.ws.client.Services.AAConWS.toString())) { service = sv; break; - * } } - */ - } - if (service == null) - { - // TODO raise dialog box explaining error, and/or open the JABA - // preferences menu. - throw new Error("No AACons service found."); - } - return new AAConsSettings(true, service, null, null); - } - - private static void removeCurrentAAConsWorkerFor(AlignFrame alignFrame) - { - alignFrame.getViewport().getCalcManager() - .removeRegisteredWorkersOfClass(AAConsClient.class); - // AAConsClient.removeAAConsAnnotation(alignFrame.alignPanel); - } }