X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2Fjabaws2%2FJws2Instance.java;h=0ac1df42b0e8655c6d96d6c540b7c5ef27afc267;hb=dfa04e77181fccfa6229ffef1591fc9c622d9b39;hp=a4a2a21555e99b0f4ae2678a2880214b8ba09353;hpb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;p=jalview.git

diff --git a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
index a4a2a21..0ac1df4 100644
--- a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
+++ b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
@@ -1,3 +1,21 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.ws.jws2.jabaws2;
 
 import jalview.gui.AlignFrame;
@@ -31,6 +49,14 @@ public class Jws2Instance
 
   public String docUrl;
 
+  /**
+   * 
+   * @param hosturl Service endpoint
+   * @param serviceType Category for this service's analysis
+   * @param action text describing their action that service performs (eg 'aligning', 'analysing')
+   * @param description Description from JABAWS registry
+   * @param service JABAWS registry ID for service
+   */
   public Jws2Instance(String hosturl, String serviceType, String action,
           String description, JABAService service)
   {
@@ -156,6 +182,8 @@ public class Jws2Instance
                         : null));
       } catch (Exception ex)
       {
+        System.err.println("Unexpected exception creating JabaParamStore.");
+        ex.printStackTrace();
       }
 
     }
@@ -205,4 +233,9 @@ public class Jws2Instance
   {
     return "java:" + serviceType;
   }
-}
\ No newline at end of file
+  jalview.ws.uimodel.AlignAnalysisUIText aaui;
+  public jalview.ws.uimodel.AlignAnalysisUIText getAlignAnalysisUI()
+  {
+    return aaui;
+  }
+}