X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Frest%2FRestClient.java;h=f42c0c4ee883e5af78dca48ae5b70940227ad99a;hb=1984126973e19bd10f39bb516d728c9226f2ba71;hp=606d927c913abffe132126364182232a9adc1119;hpb=4a3c64c3d8e65cc34ce36dd2cf8a575eea6d5493;p=jalview.git
diff --git a/src/jalview/ws/rest/RestClient.java b/src/jalview/ws/rest/RestClient.java
index 606d927..f42c0c4 100644
--- a/src/jalview/ws/rest/RestClient.java
+++ b/src/jalview/ws/rest/RestClient.java
@@ -1,3 +1,20 @@
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ *******************************************************************************/
/**
*
*/
@@ -5,7 +22,9 @@ package jalview.ws.rest;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
+import java.util.Collection;
import java.util.Hashtable;
+import java.util.Vector;
import javax.swing.JMenu;
import javax.swing.JMenuItem;
@@ -13,6 +32,7 @@ import javax.swing.JOptionPane;
import javax.swing.event.MenuEvent;
import javax.swing.event.MenuListener;
+import jalview.bin.Cache;
import jalview.datamodel.AlignmentView;
import jalview.gui.AlignFrame;
import jalview.gui.AlignViewport;
@@ -284,7 +304,7 @@ public class RestClient extends WSClient implements WSClientI,
public static RestClient makeShmmrRestClient()
{
- String action = "Analysis", description = "Sequence Harmony and Multi-Relief (UNSTABLE!)", name = "Sequence Harmony";
+ String action = "Analysis", description = "Sequence Harmony and Multi-Relief (Brandt et al. 2010)", name = "Multi-Harmony";
Hashtable iparams = new Hashtable();
jalview.ws.rest.params.JobConstant toolp;
//toolp = new jalview.ws.rest.JobConstant("tool","jalview");
@@ -314,7 +334,7 @@ public class RestClient extends WSClient implements WSClientI,
action,
description,
name,
- "http://www.ibi.vu.nl/programs/shmrwww/index.php?tool=jalview",// ?tool=jalview&mbjob[method]=shmr&mbjob[description]=step1",
+ "http://zeus.few.vu.nl/programs/shmrwww/index.php?tool=jalview",// ?tool=jalview&mbjob[method]=shmr&mbjob[description]=step1",
"?tool=jalview", iparams, true, false, '-');
// a priori knowledge of the data returned from the service
shmrService.addResultDatatype(JvDataType.ANNOTATION);
@@ -340,4 +360,92 @@ public class RestClient extends WSClient implements WSClientI,
return true;
}
+ protected static Vector services=null;
+ public static final String RSBS_SERVICES="RSBS_SERVICES";
+ public static RestClient[] getRestClients()
+ {
+ if (services==null)
+ {
+ services = new Vector();
+ try {
+ for (RestServiceDescription descr: RestServiceDescription.parseDescriptions(jalview.bin.Cache.getDefault(RSBS_SERVICES,makeShmmrRestClient().service.toString())))
+ {
+ services.add(descr.toString());
+ }
+ }
+ catch (Exception ex) {
+ System.err.println("Serious - RSBS descriptions in user preferences are corrupt!");
+ ex.printStackTrace();
+ }
+
+ }
+ RestClient[] lst = new RestClient[services.size()];
+ int i=0;
+ for (String svc:services) {
+ lst[i++] = new RestClient(new RestServiceDescription(svc));
+ }
+ return lst;
+ }
+ public static void main(String args[])
+ {
+ try {
+ RestClient[] clients = getRestClients();
+ System.out.println("Got "+clients.length+" clients.");
+ int i=0;
+ Vector urls=new Vector();
+ for (RestClient cl:clients) {
+ System.out.println(""+(++i)+": "+cl.service.toString());
+ urls.add(cl.service.toString());
+ }
+ setRsbsServices(urls);
+ if (clients.length!=getRestClients().length)
+ {
+ System.err.println("Failed. Differing numbers of clients when stringified and parsed again.");
+ }
+
+ } catch (Throwable x)
+ {
+ System.err.println("Failed. Unexpected exception.");
+ x.printStackTrace();
+ }
+ }
+ public String getAction()
+ {
+ return service.details.Action;
+ }
+
+ public RestServiceDescription getRestDescription()
+ {
+ return service;
+ }
+
+ public static Vector getRsbsDescriptions()
+ {
+ Vector rsbsDescrs = new Vector();
+ for (RestClient rsbs:getRestClients())
+ {
+ rsbsDescrs.add(rsbs.getRestDescription().toString());
+ }
+ return rsbsDescrs;
+ }
+
+ public static void setRsbsServices(Vector rsbsUrls)
+ {
+ if (rsbsUrls!=null)
+ {
+ // TODO: consider validating services ?
+ services = new Vector(rsbsUrls);
+ StringBuffer sprop = new StringBuffer();
+ for (String s:services)
+ {
+ sprop.append(s);
+ }
+ Cache.setProperty(RSBS_SERVICES, sprop.toString());
+ }
+ else
+ {
+ Cache.removeProperty(RSBS_SERVICES);
+ }
+ }
+
}