X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Frest%2FRestJobThread.java;h=35dd13b2748fbdeff6f3e9e3beae9c44a78c7cfb;hb=a8f483d04205bb8273ee311c12968b7e86d205fa;hp=bdd20c94ead043e57370405dbdd61a838cfa6c5e;hpb=a39e4da5d34f3385ad865ec6d5f7b01e8e5d30a3;p=jalview.git

diff --git a/src/jalview/ws/rest/RestJobThread.java b/src/jalview/ws/rest/RestJobThread.java
index bdd20c9..35dd13b 100644
--- a/src/jalview/ws/rest/RestJobThread.java
+++ b/src/jalview/ws/rest/RestJobThread.java
@@ -1,20 +1,21 @@
-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- *
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
  * This file is part of Jalview.
- *
+ * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
- *
+ * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- *******************************************************************************/
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.ws.rest;
 
 import jalview.bin.Cache;
@@ -40,11 +41,9 @@ import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
 import java.io.IOException;
 import java.util.ArrayList;
-import java.util.Enumeration;
 import java.util.Hashtable;
 import java.util.List;
 import java.util.Map.Entry;
-import java.util.Vector;
 
 import org.apache.axis.transport.http.HTTPConstants;
 import org.apache.http.Header;
@@ -860,10 +859,8 @@ public class RestJobThread extends AWSThread
                 // TODO: cope with recovering hidden sequences from
                 // resultContext
                 {
-                  Vector sqs = sg.getSequences(null);
-                  for (int sqsi = 0, iSize = sqs.size(); sqsi < iSize; sqsi++)
+                  for (SequenceI oseq : sg.getSequences(null))
                   {
-                    SequenceI oseq = (SequenceI) sqs.get(sqsi);
                     SequenceI nseq = getNewSeq(oseq, rseqs[nrj],
                             ordermap[nrj], destAl);
                     if (nseq != null)