X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Frest%2Fparams%2FSeqGroupIndexVector.java;fp=src%2Fjalview%2Fws%2Frest%2Fparams%2FSeqGroupIndexVector.java;h=c5b64d7eb7d6e19582f20d205ff5927f39e5e2b7;hb=8edebdd9789b2d93fb8f9db24b8be2c1e6317690;hp=5c25b472ad89546e1c9b370d28d77015338b6a58;hpb=eee8dfa05eeea5b7cc295ba020647842502efe63;p=jalview.git

diff --git a/src/jalview/ws/rest/params/SeqGroupIndexVector.java b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
index 5c25b47..c5b64d7 100644
--- a/src/jalview/ws/rest/params/SeqGroupIndexVector.java
+++ b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
@@ -20,10 +20,12 @@
  */
 package jalview.ws.rest.params;
 
+import jalview.analysis.AlignmentSorter;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
 import jalview.util.MessageManager;
+import jalview.util.QuickSort;
 import jalview.ws.params.OptionI;
 import jalview.ws.params.simple.IntegerParameter;
 import jalview.ws.params.simple.Option;
@@ -78,7 +80,7 @@ public class SeqGroupIndexVector extends InputType implements
    */
   public AlignmentI prepareAlignment(AlignmentI al)
   {
-    jalview.analysis.AlignmentSorter.sortByGroup(al);
+    AlignmentSorter.sortByGroup(al);
     return al;
   }
 
@@ -124,9 +126,13 @@ public class SeqGroupIndexVector extends InputType implements
           else
           {
             if (p < se[0])
+            {
               se[0] = p;
+            }
             if (p > se[1])
+            {
               se[1] = p;
+            }
           }
         }
         if (se != null)
@@ -170,8 +176,10 @@ public class SeqGroupIndexVector extends InputType implements
     int[][] vals = gl.toArray(new int[gl.size()][]);
     int[] srt = new int[gl.size()];
     for (int i = 0; i < vals.length; i++)
+    {
       srt[i] = vals[i][0];
-    jalview.util.QuickSort.sortInt(srt, vals);
+    }
+    QuickSort.sortInt(srt, vals);
     list = false;
     int last = vals[0][0] - 1;
     for (int[] range : vals)
@@ -245,7 +253,9 @@ public class SeqGroupIndexVector extends InputType implements
       {
         minsize = Integer.valueOf(val);
         if (minsize >= 0)
+        {
           return true;
+        }
       } catch (Exception x)
       {