X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Frest%2Fparams%2FSeqGroupIndexVector.java;h=8306873e331f0f931d87e325f7322dd686735032;hb=37de9310bec3501cbc6381e0c3dcb282fcaad812;hp=0c78e85601c6d7a8c287948b55075bb002965b5d;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/ws/rest/params/SeqGroupIndexVector.java b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
index 0c78e85..8306873 100644
--- a/src/jalview/ws/rest/params/SeqGroupIndexVector.java
+++ b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
@@ -53,8 +53,7 @@ public class SeqGroupIndexVector extends InputType implements
 {
   public SeqGroupIndexVector()
   {
-    super(new Class[]
-    { AlignmentI.class });
+    super(new Class[] { AlignmentI.class });
   }
 
   /**
@@ -100,7 +99,12 @@ public class SeqGroupIndexVector extends InputType implements
       {
         if (sg.getSize() < minsize)
         {
-          throw new NoValidInputDataException(MessageManager.formatMessage("exception.notvaliddata_group_contains_less_than_min_seqs", new String[]{Integer.valueOf(minsize).toString()}));
+          throw new NoValidInputDataException(
+                  MessageManager
+                          .formatMessage(
+                                  "exception.notvaliddata_group_contains_less_than_min_seqs",
+                                  new String[] { Integer.valueOf(minsize)
+                                          .toString() }));
         }
         // TODO: refactor to sequenceGroup for efficiency -
         // getAlignmentRowInterval(AlignmentI al)
@@ -118,8 +122,7 @@ public class SeqGroupIndexVector extends InputType implements
           }
           if (se == null)
           {
-            se = new int[]
-            { p, p };
+            se = new int[] { p, p };
           }
           else
           {
@@ -141,19 +144,16 @@ public class SeqGroupIndexVector extends InputType implements
     {
       if (lowest - 1 > minsize)
       {
-        gl.add(0, new int[]
-        { 0, lowest - 2 });
+        gl.add(0, new int[] { 0, lowest - 2 });
       }
       if ((al.getHeight() - 1 - highest) > minsize)
       {
-        gl.add(new int[]
-        { highest + 1, al.getHeight() - 1 });
+        gl.add(new int[] { highest + 1, al.getHeight() - 1 });
       }
     }
     else
     {
-      gl.add(new int[]
-      { 0, al.getHeight() - 1 });
+      gl.add(new int[] { 0, al.getHeight() - 1 });
     }
     if (min >= 0 && gl.size() < min)
     {
@@ -279,8 +279,8 @@ public class SeqGroupIndexVector extends InputType implements
     List<OptionI> lst = getBaseOptions();
     lst.add(new Option("sep",
             "Separator character between elements of vector", true, ",",
-            sep, Arrays.asList(new String[]
-            { " ", ",", ";", "\t", "|" }), null));
+            sep, Arrays.asList(new String[] { " ", ",", ";", "\t", "|" }),
+            null));
     lst.add(new IntegerParameter("minsize",
             "Minimum size of partition allowed by service", true, 1,
             minsize, 1, 0));