X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Frest%2Fparams%2FSeqVector.java;h=55ca3ffa05e23fd563060a7006447a471c3f799e;hb=1b10059cdf8b6a85fddd86a2a3c6588be3257c22;hp=cbd73dd0fd303e707ae283d96ccc2b73b3f29992;hpb=37de9310bec3501cbc6381e0c3dcb282fcaad812;p=jalview.git

diff --git a/src/jalview/ws/rest/params/SeqVector.java b/src/jalview/ws/rest/params/SeqVector.java
index cbd73dd..55ca3ff 100644
--- a/src/jalview/ws/rest/params/SeqVector.java
+++ b/src/jalview/ws/rest/params/SeqVector.java
@@ -65,7 +65,7 @@ public class SeqVector extends InputType
       {
         idvector.append(sep);
       }
-      idvector.append(seq.getSequence());
+      idvector.append(seq.getSequenceAsString());
     }
     return new StringBody(idvector.toString());
   }
@@ -107,8 +107,8 @@ public class SeqVector extends InputType
         return true;
       } catch (Exception x)
       {
-        warnings.append("Invalid molecule type '" + val
-                + "'. Must be one of (");
+        warnings.append(
+                "Invalid molecule type '" + val + "'. Must be one of (");
         for (molType v : molType.values())
         {
           warnings.append(" " + v);
@@ -125,8 +125,8 @@ public class SeqVector extends InputType
     List<OptionI> lst = getBaseOptions();
     lst.add(new Option("sep",
             "Separator character between elements of vector", true, ",",
-            sep, Arrays.asList(new String[] { " ", ",", ";", "\t", "|" }),
-            null));
+            sep, Arrays.asList(new String[]
+            { " ", ",", ";", "\t", "|" }), null));
     lst.add(createMolTypeOption("type", "Sequence type", false, type,
             molType.MIX));