X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Frest%2Fparams%2FSeqVector.java;h=578e7cc1c08a1b650718401e2bd7b1a8eacf7f36;hb=c4b90e7ff57436d6bb96d316eed24c887b241f4d;hp=5efc74c94397fd7288b9ba522576df06e626e960;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/ws/rest/params/SeqVector.java b/src/jalview/ws/rest/params/SeqVector.java
index 5efc74c..578e7cc 100644
--- a/src/jalview/ws/rest/params/SeqVector.java
+++ b/src/jalview/ws/rest/params/SeqVector.java
@@ -50,8 +50,7 @@ public class SeqVector extends InputType
 
   public SeqVector()
   {
-    super(new Class[]
-    { AlignmentI.class });
+    super(new Class[] { AlignmentI.class });
   }
 
   @Override
@@ -66,7 +65,7 @@ public class SeqVector extends InputType
       {
         idvector.append(sep);
       }
-      idvector.append(seq.getSequence());
+      idvector.append(seq.getSequenceAsString());
     }
     return new StringBody(idvector.toString());
   }
@@ -126,8 +125,8 @@ public class SeqVector extends InputType
     List<OptionI> lst = getBaseOptions();
     lst.add(new Option("sep",
             "Separator character between elements of vector", true, ",",
-            sep, Arrays.asList(new String[]
-            { " ", ",", ";", "\t", "|" }), null));
+            sep, Arrays.asList(new String[] { " ", ",", ";", "\t", "|" }),
+            null));
     lst.add(createMolTypeOption("type", "Sequence type", false, type,
             molType.MIX));