X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Frest%2Fparams%2FTree.java;h=3487cb4f151e79e277a8aa3f89c13f484654dd83;hb=dfa04e77181fccfa6229ffef1591fc9c622d9b39;hp=50fe7e83b631025f0574a65bff2f2d5002085eee;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git
diff --git a/src/jalview/ws/rest/params/Tree.java b/src/jalview/ws/rest/params/Tree.java
index 50fe7e8..3487cb4 100644
--- a/src/jalview/ws/rest/params/Tree.java
+++ b/src/jalview/ws/rest/params/Tree.java
@@ -1,29 +1,26 @@
-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- *
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
+ *
* This file is part of Jalview.
- *
+ *
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
- *
+ *
* You should have received a copy of the GNU General Public License along with Jalview. If not, see .
- *******************************************************************************/
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.ws.rest.params;
-import jalview.datamodel.AlignmentI;
-import jalview.ws.params.ArgumentI;
import jalview.ws.params.OptionI;
import jalview.ws.rest.InputType;
import jalview.ws.rest.RestJob;
-import jalview.ws.rest.RestServiceDescription;
-import jalview.ws.rest.InputType.molType;
import java.io.UnsupportedEncodingException;
import java.util.ArrayList;
@@ -33,30 +30,36 @@ import org.apache.http.entity.mime.content.ContentBody;
/**
* format a tree for input to a rest service
+ *
* @author JimP
- *
+ *
*/
-public class Tree extends InputType {
+public class Tree extends InputType
+{
public Tree()
{
- super(new Class[] { jalview.analysis.NJTree.class} );
+ super(new Class[]
+ { jalview.analysis.NJTree.class });
}
// TODO specify modifiers for tree output format
@Override
- public ContentBody formatForInput(RestJob rj) throws UnsupportedEncodingException
+ public ContentBody formatForInput(RestJob rj)
+ throws UnsupportedEncodingException
{
// TODO: implement tree inputType
- /*rj.getTreeForInput(token);
- return new StringBody(new ) */
+ /*
+ * rj.getTreeForInput(token); return new StringBody(new )
+ */
throw new Error("Tree InputType not yet implemented");
- //return null;
+ // return null;
}
+
public String getURLtokenPrefix()
{
- return "NEWICK";
+ return "NEWICK";
}
-
+
@Override
public List getURLEncodedParameter()
{
@@ -78,4 +81,4 @@ public class Tree extends InputType {
return getBaseOptions();
}
-}
\ No newline at end of file
+}