X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Frest%2Fparams%2FTree.java;h=d963cb26018ad251b0cb1283d0f0707c7af04476;hb=ad15cff29620f960119f80176f1fd443da9f6763;hp=91fab402cb8dbcf5ad2565554ff2632ad403bf82;hpb=c762d9525db36ffd5d3fca49fb5e7d506d13401a;p=jalview.git

diff --git a/src/jalview/ws/rest/params/Tree.java b/src/jalview/ws/rest/params/Tree.java
index 91fab40..d963cb2 100644
--- a/src/jalview/ws/rest/params/Tree.java
+++ b/src/jalview/ws/rest/params/Tree.java
@@ -1,33 +1,87 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.ws.rest.params;
 
-import jalview.datamodel.AlignmentI;
+import jalview.util.MessageManager;
+import jalview.ws.params.OptionI;
 import jalview.ws.rest.InputType;
 import jalview.ws.rest.RestJob;
 
 import java.io.UnsupportedEncodingException;
+import java.util.ArrayList;
+import java.util.List;
 
 import org.apache.http.entity.mime.content.ContentBody;
 
 /**
  * format a tree for input to a rest service
+ * 
  * @author JimP
- *
+ * 
  */
-class Tree extends InputType {
+public class Tree extends InputType
+{
   public Tree()
   {
-    super(new Class[] { jalview.analysis.NJTree.class} );
+    super(new Class[]
+    { jalview.analysis.NJTree.class });
   }
 
   // TODO specify modifiers for tree output format
   @Override
-  public ContentBody formatForInput(RestJob rj) throws UnsupportedEncodingException
+  public ContentBody formatForInput(RestJob rj)
+          throws UnsupportedEncodingException
   {
     // TODO: implement tree inputType
-    /*rj.getTreeForInput(token);
-    return new StringBody(new ) */
-    throw new Error("Tree InputType not yet implemented");
-    //return null;
+    /*
+     * rj.getTreeForInput(token); return new StringBody(new )
+     */
+    throw new Error(MessageManager.getString("error.tree_inputtype_not_yet_implemented"));
+    // return null;
   }
-  
-}
\ No newline at end of file
+
+  public String getURLtokenPrefix()
+  {
+    return "NEWICK";
+  }
+
+  @Override
+  public List<String> getURLEncodedParameter()
+  {
+    ArrayList<String> prms = new ArrayList<String>();
+    super.addBaseParams(prms);
+    return prms;
+  }
+
+  @Override
+  public boolean configureProperty(String tok, String val,
+          StringBuffer warnings)
+  {
+    return true;
+  }
+
+  @Override
+  public List<OptionI> getOptions()
+  {
+    return getBaseOptions();
+  }
+
+}