X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fseqfetcher%2FASequenceFetcher.java;h=1baa58be74f9cf001970af6d71f67bef1a49071e;hb=f215c30c91a7532eb97655349b70b9eb73a283d5;hp=013fb1593d77db8ccfe6acb1c4bab7e1d2e11fe5;hpb=729da71b3927879d79062fe4770ed024068bbd17;p=jalview.git

diff --git a/src/jalview/ws/seqfetcher/ASequenceFetcher.java b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
index 013fb15..1baa58b 100644
--- a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@ -1,20 +1,19 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
  * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  * 
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  */
 package jalview.ws.seqfetcher;
 
@@ -211,8 +210,8 @@ public class ASequenceFetcher
    * Retrieve an instance of the proxy for the given source
    * 
    * @param db
-   *                database source string TODO: add version string/wildcard for
-   *                retrieval of specific DB source/version combinations.
+   *          database source string TODO: add version string/wildcard for
+   *          retrieval of specific DB source/version combinations.
    * @return an instance of DbSourceProxy for that db.
    */
   public DbSourceProxy getSourceProxy(String db)
@@ -226,11 +225,10 @@ public class ASequenceFetcher
    * dbrefsource
    * 
    * @param dbSourceProxy
-   *                reference for class implementing
-   *                jalview.ws.seqfetcher.DbSourceProxy
+   *          reference for class implementing
+   *          jalview.ws.seqfetcher.DbSourceProxy
    * @throws java.lang.IllegalArgumentException
-   *                 if class does not implement
-   *                 jalview.ws.seqfetcher.DbSourceProxy
+   *           if class does not implement jalview.ws.seqfetcher.DbSourceProxy
    */
   protected void addDBRefSourceImpl(Class dbSourceProxy)
           throws java.lang.IllegalArgumentException
@@ -299,6 +297,7 @@ public class ASequenceFetcher
 
   /**
    * select sources which are implemented by instances of the given class
+   * 
    * @param class that implements DbSourceProxy
    * @return null or vector of source names for fetchers
    */
@@ -306,9 +305,11 @@ public class ASequenceFetcher
   {
     if (!jalview.ws.seqfetcher.DbSourceProxy.class.isAssignableFrom(class1))
     {
-      throw new Error("Implmentation Error - getDbInstances must be given a class that implements jalview.ws.seqfetcher.DbSourceProxy (was given '"+class1+"')");
+      throw new Error(
+              "Implmentation Error - getDbInstances must be given a class that implements jalview.ws.seqfetcher.DbSourceProxy (was given '"
+                      + class1 + "')");
     }
-    if (FETCHABLEDBS==null)
+    if (FETCHABLEDBS == null)
     {
       return null;
     }
@@ -324,7 +325,7 @@ public class ASequenceFetcher
         src.addElement(dbn);
       }
     }
-    if (src.size()>0)
+    if (src.size() > 0)
     {
       src.copyInto(sources = new String[src.size()]);
     }