X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fseqfetcher%2FDbSourceProxyImpl.java;h=ab4644ebff4bd86d859020784d4447e4e15017c9;hb=3d0101179759ef157b088ea135423cd909512d9f;hp=84072c01516650fb4c00d7f08ca82c7ee3499393;hpb=ef9282b464dc189faf9ce40a4b7420a204266668;p=jalview.git diff --git a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java index 84072c0..ab4644e 100644 --- a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java +++ b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java @@ -20,7 +20,10 @@ */ package jalview.ws.seqfetcher; +import jalview.api.FeatureSettingsModelI; import jalview.datamodel.AlignmentI; +import jalview.io.DataSourceType; +import jalview.io.FileFormatI; import jalview.io.FormatAdapter; import jalview.io.IdentifyFile; @@ -91,11 +94,12 @@ public abstract class DbSourceProxyImpl implements DbSourceProxy protected AlignmentI parseResult(String result) throws Exception { AlignmentI sequences = null; - String format = new IdentifyFile().identify(result, "Paste"); - if (FormatAdapter.isValidFormat(format)) + FileFormatI format = new IdentifyFile().identify(result, + DataSourceType.PASTE); + if (format != null) { - sequences = new FormatAdapter().readFile(result.toString(), "Paste", - format); + sequences = new FormatAdapter().readFile(result.toString(), + DataSourceType.PASTE, format); } return sequences; } @@ -146,6 +150,12 @@ public abstract class DbSourceProxyImpl implements DbSourceProxy @Override public String getDescription() { + return ""; + } + + @Override + public FeatureSettingsModelI getFeatureColourScheme() + { return null; } }