X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fsifts%2FSiftsClient.java;h=d0656667f7891beaf88d1c2be107384235e58ebb;hb=f3213c0763f9a1d1b911ad5d64074b971f5b8e8b;hp=5050c342db38979b4c3d813306e4fdb90c660def;hpb=2a193973a99a80b2b2d13af673ea64863cdbb6c2;p=jalview.git

diff --git a/src/jalview/ws/sifts/SiftsClient.java b/src/jalview/ws/sifts/SiftsClient.java
index 5050c34..d065666 100644
--- a/src/jalview/ws/sifts/SiftsClient.java
+++ b/src/jalview/ws/sifts/SiftsClient.java
@@ -71,8 +71,8 @@ import javax.xml.bind.Unmarshaller;
 import javax.xml.stream.XMLInputFactory;
 import javax.xml.stream.XMLStreamReader;
 
-import MCview.Atom;
-import MCview.PDBChain;
+import mc_view.Atom;
+import mc_view.PDBChain;
 
 public class SiftsClient implements SiftsClientI
 {
@@ -690,6 +690,13 @@ public class SiftsClient implements SiftsClientI
             ++nonObservedShiftIndex;
           }
         }
+        if (currSeqIndex == UNASSIGNED)
+        {
+          // change in logic - unobserved residues with no currSeqIndex
+          // corresponding are still counted in both nonObservedShiftIndex and
+          // pdbeIndex...
+          continue;
+        }
         // if (currSeqIndex >= seq.getStart() && currSeqIndex <= seqlength) //
         // true
                                                                          // numbering