X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fuimodel%2FPDBRestRequest.java;fp=src%2Fjalview%2Fws%2Fuimodel%2FPDBRestRequest.java;h=0000000000000000000000000000000000000000;hb=64dd25185d2caf389946bb7e70053183d5aa31a6;hp=7bfc226dba2f6ea894e976e7bfea529c182c9a68;hpb=39a3725d4d499eb0f1bd14e3c049cd954faddfdc;p=jalview.git

diff --git a/src/jalview/ws/uimodel/PDBRestRequest.java b/src/jalview/ws/uimodel/PDBRestRequest.java
deleted file mode 100644
index 7bfc226..0000000
--- a/src/jalview/ws/uimodel/PDBRestRequest.java
+++ /dev/null
@@ -1,193 +0,0 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-
-package jalview.ws.uimodel;
-
-import jalview.bin.Cache;
-import jalview.datamodel.SequenceI;
-import jalview.ws.dbsources.PDBRestClient.PDBDocField;
-
-import java.util.Collection;
-
-/**
- * Represents the PDB request to be consumed by the PDBRestClient
- * 
- * @author tcnofoegbu
- *
- */
-public class PDBRestRequest
-{
-  private String fieldToSearchBy;
-
-  private String searchTerm;
-
-  private String fieldToSortBy;
-
-  private SequenceI associatedSequence;
-
-  private boolean allowEmptySequence;
-
-  private boolean allowUnpublishedEntries = Cache.getDefault(
-          "ALLOW_UNPUBLISHED_PDB_QUERYING", false);
-
-  private boolean facet;
-
-  private String facetPivot;
-
-  private int facetPivotMinCount;
-
-  private int responseSize;
-
-  private boolean isSortAscending;
-
-  private Collection<PDBDocField> wantedFields;
-
-  public String getFieldToSearchBy()
-  {
-    return fieldToSearchBy;
-  }
-
-  public void setFieldToSearchBy(String fieldToSearchBy)
-  {
-    this.fieldToSearchBy = fieldToSearchBy;
-  }
-
-  public String getSearchTerm()
-  {
-    return searchTerm;
-  }
-
-  public void setSearchTerm(String searchTerm)
-  {
-    this.searchTerm = searchTerm;
-  }
-
-  public boolean isAllowEmptySeq()
-  {
-    return allowEmptySequence;
-  }
-
-  public void setAllowEmptySeq(boolean allowEmptySeq)
-  {
-    this.allowEmptySequence = allowEmptySeq;
-  }
-
-  public int getResponseSize()
-  {
-    return responseSize;
-  }
-
-  public void setResponseSize(int responseSize)
-  {
-    this.responseSize = responseSize;
-  }
-
-  public Collection<PDBDocField> getWantedFields()
-  {
-    return wantedFields;
-  }
-
-  public void setWantedFields(Collection<PDBDocField> wantedFields)
-  {
-    this.wantedFields = wantedFields;
-  }
-
-  public String getFieldToSortBy()
-  {
-    return fieldToSortBy;
-  }
-
-  public void setFieldToSortBy(String fieldToSortBy, boolean isSortAscending)
-  {
-    this.fieldToSortBy = fieldToSortBy;
-    this.isSortAscending = isSortAscending;
-  }
-
-  public boolean isAscending()
-  {
-    return isSortAscending;
-  }
-
-  public SequenceI getAssociatedSequence()
-  {
-    return associatedSequence;
-  }
-
-  public void setAssociatedSequence(SequenceI associatedSequence)
-  {
-    this.associatedSequence = associatedSequence;
-  }
-
-  public String getQuery()
-  {
-    return fieldToSearchBy + searchTerm
-            + (isAllowEmptySeq() ? "" : " AND molecule_sequence:['' TO *]")
-            + (isAllowUnpublishedEntries() ? "" : " AND status:REL");
-  }
-
-  @Override
-  public String toString()
-  {
-    return "Query : " + getQuery() + " sort field: " + fieldToSortBy
-            + " isAsc: " + isAscending() + " Associated Seq : "
-            + associatedSequence;
-  }
-
-  public boolean isAllowUnpublishedEntries()
-  {
-    return allowUnpublishedEntries;
-  }
-
-  public void setAllowUnpublishedEntries(boolean allowUnpublishedEntries)
-  {
-    this.allowUnpublishedEntries = allowUnpublishedEntries;
-  }
-
-  public boolean isFacet()
-  {
-    return facet;
-  }
-
-  public void setFacet(boolean facet)
-  {
-    this.facet = facet;
-  }
-
-  public String getFacetPivot()
-  {
-    return facetPivot;
-  }
-
-  public void setFacetPivot(String facetPivot)
-  {
-    this.facetPivot = facetPivot;
-  }
-
-  public int getFacetPivotMinCount()
-  {
-    return facetPivotMinCount;
-  }
-
-  public void setFacetPivotMinCount(int facetPivotMinCount)
-  {
-    this.facetPivotMinCount = facetPivotMinCount;
-  }
-}