X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fuimodel%2FPDBRestRequest.java;h=24f38d1dc1c770cba7d8b59a2319123403070624;hb=8073a17f5bbbec8cf01b8711cb5db256effcb05c;hp=7826fbdc6458c2a31871ebd3a0e337846e7513f4;hpb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;p=jalview.git

diff --git a/src/jalview/ws/uimodel/PDBRestRequest.java b/src/jalview/ws/uimodel/PDBRestRequest.java
index 7826fbd..24f38d1 100644
--- a/src/jalview/ws/uimodel/PDBRestRequest.java
+++ b/src/jalview/ws/uimodel/PDBRestRequest.java
@@ -21,6 +21,7 @@
 
 package jalview.ws.uimodel;
 
+import jalview.bin.Cache;
 import jalview.datamodel.SequenceI;
 import jalview.ws.dbsources.PDBRestClient.PDBDocField;
 
@@ -44,12 +45,14 @@ public class PDBRestRequest
 
   private boolean allowEmptySequence;
 
+  private boolean allowUnpublishedEntries = Cache.getDefault(
+          "ALLOW_UNPUBLISHED_PDB_QUERYING", false);
+
   private int responseSize;
 
   private boolean isSortAscending;
 
-  private Collection<PDBDocField> wantedFields;// = new
-                                               // Collection<PDBDocField>();
+  private Collection<PDBDocField> wantedFields;
 
   public String getFieldToSearchBy()
   {
@@ -130,7 +133,8 @@ public class PDBRestRequest
   public String getQuery()
   {
     return fieldToSearchBy + searchTerm
-            + (isAllowEmptySeq() ? "" : " AND molecule_sequence:['' TO *]");
+            + (isAllowEmptySeq() ? "" : " AND molecule_sequence:['' TO *]")
+            + (isAllowUnpublishedEntries() ? "" : " AND status:REL");
   }
 
   public String toString()
@@ -139,4 +143,14 @@ public class PDBRestRequest
             + " isAsc: " + isAscending() + " Associated Seq : "
             + associatedSequence;
   }
+
+  public boolean isAllowUnpublishedEntries()
+  {
+    return allowUnpublishedEntries;
+  }
+
+  public void setAllowUnpublishedEntries(boolean allowUnpublishedEntries)
+  {
+    this.allowUnpublishedEntries = allowUnpublishedEntries;
+  }
 }