X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws2%2Foperations%2FAnnotationOperation.java;h=f927b2b5b283e9c6b7661719bfd42b06be80b9d8;hb=dc2e21ef0092f0e79c1837fc76a81710bc74e3a0;hp=6518733c7b876a742719dfaf420b9421e88544fb;hpb=2bbba7f7426314bfd6a1f206861542244b5f511a;p=jalview.git

diff --git a/src/jalview/ws2/operations/AnnotationOperation.java b/src/jalview/ws2/operations/AnnotationOperation.java
index 6518733..f927b2b 100644
--- a/src/jalview/ws2/operations/AnnotationOperation.java
+++ b/src/jalview/ws2/operations/AnnotationOperation.java
@@ -48,6 +48,10 @@ public class AnnotationOperation implements Operation
 
   boolean interactive = false;
 
+  private boolean isProtOperation = true;
+
+  private boolean isNucOperation = true;
+
   /*
    * Is it fine to get rid of AlignAnalysisUIText?
    */
@@ -67,7 +71,7 @@ public class AnnotationOperation implements Operation
   {
     return service.getName();
   }
-  
+
   @Override
   public String getDescription()
   {
@@ -85,13 +89,13 @@ public class AnnotationOperation implements Operation
   {
     return service.getHostName();
   }
-  
+
   @Override
   public boolean hasParameters()
   {
     return service.hasParameters();
   }
-  
+
   @Override
   public ParamDatastoreI getParamStore()
   {
@@ -119,13 +123,23 @@ public class AnnotationOperation implements Operation
   @Override
   public boolean isProteinOperation()
   {
-    return true;
+    return isProtOperation;
+  }
+
+  public void setProteinOperation(boolean value)
+  {
+    isProtOperation = value;
   }
 
   @Override
   public boolean isNucleotideOperation()
   {
-    return true;
+    return isNucOperation;
+  }
+
+  public void setNucleotideOperation(boolean value)
+  {
+    isNucOperation = value;
   }
 
   @Override