X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FAnnotation.java;fp=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FAnnotation.java;h=8c07465f944fa9cd7d36fb2e28c3ee6a8f706bdc;hb=3659ecfe7bb17dd25a0a6b5c94a7d9dab4525136;hp=8d66aa3981a49930c07eb10aeacea9ad0677aad0;hpb=dbdd2bd3493e0aef8aa3c0fe054c6bceedc31316;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/Annotation.java b/src/jalview/xml/binding/jalview/Annotation.java index 8d66aa3..8c07465 100644 --- a/src/jalview/xml/binding/jalview/Annotation.java +++ b/src/jalview/xml/binding/jalview/Annotation.java @@ -1,10 +1,11 @@ // -// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 -// See https://eclipse-ee4j.github.io/jaxb-ri +// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 +// See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2021.08.30 at 11:05:22 AM BST +// Generated on: 2023.01.31 at 04:07:08 PM GMT // + package jalview.xml.binding.jalview; import java.util.ArrayList; @@ -16,846 +17,841 @@ import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; + /** - * <p>Java class for anonymous complex type. + *

Java class for anonymous complex type. * - * <p>The following schema fragment specifies the expected content - * contained within this class. + *

The following schema fragment specifies the expected content contained within this class. * - * <pre> &lt;complexType&gt; &lt;complexContent&gt; - * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; - * &lt;sequence&gt; &lt;element - * ref="{www.vamsas.ac.uk/jalview/version2}annotationElement" - * maxOccurs="unbounded" minOccurs="0"/&gt; &lt;element name="label" - * type="{http://www.w3.org/2001/XMLSchema}string"/&gt; &lt;element - * name="description" type="{http://www.w3.org/2001/XMLSchema}string" - * minOccurs="0"/&gt; &lt;element name="thresholdLine" - * minOccurs="0"&gt; &lt;complexType&gt; - * &lt;complexContent&gt; &lt;restriction - * base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; &lt;attribute - * name="label" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" - * /&gt; &lt;attribute name="colour" - * type="{http://www.w3.org/2001/XMLSchema}int" /&gt; - * &lt;/restriction&gt; &lt;/complexContent&gt; - * &lt;/complexType&gt; &lt;/element&gt; &lt;element - * name="property" maxOccurs="unbounded" minOccurs="0"&gt; - * &lt;complexType&gt; &lt;complexContent&gt; - * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; - * &lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" - * /&gt; &lt;attribute name="value" - * type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;/restriction&gt; &lt;/complexContent&gt; - * &lt;/complexType&gt; &lt;/element&gt; - * &lt;/sequence&gt; &lt;attribute name="graph" use="required" - * type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt; &lt;attribute - * name="graphType" type="{http://www.w3.org/2001/XMLSchema}int" /&gt; - * &lt;attribute name="sequenceRef" - * type="{http://www.w3.org/2001/XMLSchema}string" /&gt; &lt;attribute - * name="groupRef" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;attribute name="graphColour" - * type="{http://www.w3.org/2001/XMLSchema}int" /&gt; &lt;attribute - * name="graphGroup" type="{http://www.w3.org/2001/XMLSchema}int" /&gt; - * &lt;attribute name="graphHeight" - * type="{http://www.w3.org/2001/XMLSchema}int" /&gt; &lt;attribute - * name="id" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;attribute name="scoreOnly" - * type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt; - * &lt;attribute name="score" - * type="{http://www.w3.org/2001/XMLSchema}double" /&gt; &lt;attribute - * name="visible" type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt; - * &lt;attribute name="centreColLabels" - * type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt; &lt;attribute - * name="scaleColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" - * /&gt; &lt;attribute name="showAllColLabels" - * type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt; &lt;attribute - * name="autoCalculated" type="{http://www.w3.org/2001/XMLSchema}boolean" - * default="false" /&gt; &lt;attribute name="belowAlignment" - * type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" /&gt; - * &lt;attribute name="calcId" - * type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;/restriction&gt; &lt;/complexContent&gt; - * &lt;/complexType&gt; </pre> + * 

+ * <complexType>
+ *   <complexContent>
+ *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       <sequence>
+ *         <element ref="{www.vamsas.ac.uk/jalview/version2}annotationElement" maxOccurs="unbounded" minOccurs="0"/>
+ *         <element name="label" type="{http://www.w3.org/2001/XMLSchema}string"/>
+ *         <element name="description" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ *         <element name="thresholdLine" minOccurs="0">
+ *           <complexType>
+ *             <complexContent>
+ *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *                 <attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *                 <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" />
+ *                 <attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *               </restriction>
+ *             </complexContent>
+ *           </complexType>
+ *         </element>
+ *         <element name="property" maxOccurs="unbounded" minOccurs="0">
+ *           <complexType>
+ *             <complexContent>
+ *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *                 <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *                 <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *               </restriction>
+ *             </complexContent>
+ *           </complexType>
+ *         </element>
+ *       </sequence>
+ *       <attribute name="graph" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *       <attribute name="graphType" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *       <attribute name="sequenceRef" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *       <attribute name="groupRef" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *       <attribute name="graphColour" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *       <attribute name="graphGroup" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *       <attribute name="graphHeight" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *       <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *       <attribute name="scoreOnly" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ *       <attribute name="score" type="{http://www.w3.org/2001/XMLSchema}double" />
+ *       <attribute name="visible" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *       <attribute name="centreColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *       <attribute name="scaleColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *       <attribute name="showAllColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *       <attribute name="autoCalculated" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ *       <attribute name="belowAlignment" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" />
+ *       <attribute name="calcId" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *     </restriction>
+ *   </complexContent>
+ * </complexType>
+ *
* * */ @XmlAccessorType(XmlAccessType.FIELD) -@XmlType( - name = "", - propOrder = - { "annotationElement", "label", "description", "thresholdLine", - "property" }) +@XmlType(name = "", propOrder = { + "annotationElement", + "label", + "description", + "thresholdLine", + "property" +}) @XmlRootElement(name = "Annotation") -public class Annotation -{ +public class Annotation { - protected List annotationElement; + protected List annotationElement; + @XmlElement(required = true) + protected String label; + protected String description; + protected Annotation.ThresholdLine thresholdLine; + protected List property; + @XmlAttribute(name = "graph", required = true) + protected boolean graph; + @XmlAttribute(name = "graphType") + protected Integer graphType; + @XmlAttribute(name = "sequenceRef") + protected String sequenceRef; + @XmlAttribute(name = "groupRef") + protected String groupRef; + @XmlAttribute(name = "graphColour") + protected Integer graphColour; + @XmlAttribute(name = "graphGroup") + protected Integer graphGroup; + @XmlAttribute(name = "graphHeight") + protected Integer graphHeight; + @XmlAttribute(name = "id") + protected String id; + @XmlAttribute(name = "scoreOnly") + protected Boolean scoreOnly; + @XmlAttribute(name = "score") + protected Double score; + @XmlAttribute(name = "visible") + protected Boolean visible; + @XmlAttribute(name = "centreColLabels") + protected Boolean centreColLabels; + @XmlAttribute(name = "scaleColLabels") + protected Boolean scaleColLabels; + @XmlAttribute(name = "showAllColLabels") + protected Boolean showAllColLabels; + @XmlAttribute(name = "autoCalculated") + protected Boolean autoCalculated; + @XmlAttribute(name = "belowAlignment") + protected Boolean belowAlignment; + @XmlAttribute(name = "calcId") + protected String calcId; - @XmlElement(required = true) - protected String label; - - protected String description; - - protected Annotation.ThresholdLine thresholdLine; - - protected List property; - - @XmlAttribute(name = "graph", required = true) - protected boolean graph; - - @XmlAttribute(name = "graphType") - protected Integer graphType; - - @XmlAttribute(name = "sequenceRef") - protected String sequenceRef; - - @XmlAttribute(name = "groupRef") - protected String groupRef; - - @XmlAttribute(name = "graphColour") - protected Integer graphColour; - - @XmlAttribute(name = "graphGroup") - protected Integer graphGroup; - - @XmlAttribute(name = "graphHeight") - protected Integer graphHeight; - - @XmlAttribute(name = "id") - protected String id; - - @XmlAttribute(name = "scoreOnly") - protected Boolean scoreOnly; - - @XmlAttribute(name = "score") - protected Double score; - - @XmlAttribute(name = "visible") - protected Boolean visible; - - @XmlAttribute(name = "centreColLabels") - protected Boolean centreColLabels; - - @XmlAttribute(name = "scaleColLabels") - protected Boolean scaleColLabels; - - @XmlAttribute(name = "showAllColLabels") - protected Boolean showAllColLabels; - - @XmlAttribute(name = "autoCalculated") - protected Boolean autoCalculated; - - @XmlAttribute(name = "belowAlignment") - protected Boolean belowAlignment; - - @XmlAttribute(name = "calcId") - protected String calcId; - - /** - * Gets the value of the annotationElement property. - * - * <p> This accessor method returns a reference to the live list, not a - * snapshot. Therefore any modification you make to the returned list will be - * present inside the JAXB object. This is why there is not a - * <CODE>set</CODE> method for the annotationElement property. - * - * <p> For example, to add a new item, do as follows: <pre> - * getAnnotationElement().add(newItem); </pre> - * - * - * <p> Objects of the following type(s) are allowed in the list - * {@link AnnotationElement } - * - * - */ - public List getAnnotationElement() - { - if (annotationElement == null) - { - annotationElement = new ArrayList(); - } - return this.annotationElement; - } - - /** - * Gets the value of the label property. - * - * @return possible object is {@link String } - * - */ - public String getLabel() - { - return label; - } - - /** - * Sets the value of the label property. - * - * @param value - * allowed object is {@link String } - * - */ - public void setLabel(String value) - { - this.label = value; - } - - /** - * Gets the value of the description property. - * - * @return possible object is {@link String } - * - */ - public String getDescription() - { - return description; - } - - /** - * Sets the value of the description property. - * - * @param value - * allowed object is {@link String } - * - */ - public void setDescription(String value) - { - this.description = value; - } - - /** - * Gets the value of the thresholdLine property. - * - * @return possible object is {@link Annotation.ThresholdLine } - * - */ - public Annotation.ThresholdLine getThresholdLine() - { - return thresholdLine; - } - - /** - * Sets the value of the thresholdLine property. - * - * @param value - * allowed object is {@link Annotation.ThresholdLine } - * - */ - public void setThresholdLine(Annotation.ThresholdLine value) - { - this.thresholdLine = value; - } - - /** - * Gets the value of the property property. - * - * <p> This accessor method returns a reference to the live list, not a - * snapshot. Therefore any modification you make to the returned list will be - * present inside the JAXB object. This is why there is not a - * <CODE>set</CODE> method for the property property. - * - * <p> For example, to add a new item, do as follows: <pre> - * getProperty().add(newItem); </pre> - * - * - * <p> Objects of the following type(s) are allowed in the list - * {@link Annotation.Property } - * - * - */ - public List getProperty() - { - if (property == null) - { - property = new ArrayList(); - } - return this.property; - } - - /** - * Gets the value of the graph property. - * - */ - public boolean isGraph() - { - return graph; - } - - /** - * Sets the value of the graph property. - * - */ - public void setGraph(boolean value) - { - this.graph = value; - } - - /** - * Gets the value of the graphType property. - * - * @return possible object is {@link Integer } - * - */ - public Integer getGraphType() - { - return graphType; - } - - /** - * Sets the value of the graphType property. - * - * @param value - * allowed object is {@link Integer } - * - */ - public void setGraphType(Integer value) - { - this.graphType = value; - } - - /** - * Gets the value of the sequenceRef property. - * - * @return possible object is {@link String } - * - */ - public String getSequenceRef() - { - return sequenceRef; - } - - /** - * Sets the value of the sequenceRef property. - * - * @param value - * allowed object is {@link String } - * - */ - public void setSequenceRef(String value) - { - this.sequenceRef = value; - } - - /** - * Gets the value of the groupRef property. - * - * @return possible object is {@link String } - * - */ - public String getGroupRef() - { - return groupRef; - } - - /** - * Sets the value of the groupRef property. - * - * @param value - * allowed object is {@link String } - * - */ - public void setGroupRef(String value) - { - this.groupRef = value; - } - - /** - * Gets the value of the graphColour property. - * - * @return possible object is {@link Integer } - * - */ - public Integer getGraphColour() - { - return graphColour; - } - - /** - * Sets the value of the graphColour property. - * - * @param value - * allowed object is {@link Integer } - * - */ - public void setGraphColour(Integer value) - { - this.graphColour = value; - } - - /** - * Gets the value of the graphGroup property. - * - * @return possible object is {@link Integer } - * - */ - public Integer getGraphGroup() - { - return graphGroup; - } - - /** - * Sets the value of the graphGroup property. - * - * @param value - * allowed object is {@link Integer } - * - */ - public void setGraphGroup(Integer value) - { - this.graphGroup = value; - } - - /** - * Gets the value of the graphHeight property. - * - * @return possible object is {@link Integer } - * - */ - public Integer getGraphHeight() - { - return graphHeight; - } - - /** - * Sets the value of the graphHeight property. - * - * @param value - * allowed object is {@link Integer } - * - */ - public void setGraphHeight(Integer value) - { - this.graphHeight = value; - } - - /** - * Gets the value of the id property. - * - * @return possible object is {@link String } - * - */ - public String getId() - { - return id; - } - - /** - * Sets the value of the id property. - * - * @param value - * allowed object is {@link String } - * - */ - public void setId(String value) - { - this.id = value; - } - - /** - * Gets the value of the scoreOnly property. - * - * @return possible object is {@link Boolean } - * - */ - public boolean isScoreOnly() - { - if (scoreOnly == null) - { - return false; - } - else - { - return scoreOnly; - } - } - - /** - * Sets the value of the scoreOnly property. - * - * @param value - * allowed object is {@link Boolean } - * - */ - public void setScoreOnly(Boolean value) - { - this.scoreOnly = value; - } - - /** - * Gets the value of the score property. - * - * @return possible object is {@link Double } - * - */ - public Double getScore() - { - return score; - } - - /** - * Sets the value of the score property. - * - * @param value - * allowed object is {@link Double } - * - */ - public void setScore(Double value) - { - this.score = value; - } - - /** - * Gets the value of the visible property. - * - * @return possible object is {@link Boolean } - * - */ - public Boolean isVisible() - { - return visible; - } - - /** - * Sets the value of the visible property. - * - * @param value - * allowed object is {@link Boolean } - * - */ - public void setVisible(Boolean value) - { - this.visible = value; - } - - /** - * Gets the value of the centreColLabels property. - * - * @return possible object is {@link Boolean } - * - */ - public Boolean isCentreColLabels() - { - return centreColLabels; - } - - /** - * Sets the value of the centreColLabels property. - * - * @param value - * allowed object is {@link Boolean } - * - */ - public void setCentreColLabels(Boolean value) - { - this.centreColLabels = value; - } - - /** - * Gets the value of the scaleColLabels property. - * - * @return possible object is {@link Boolean } - * - */ - public Boolean isScaleColLabels() - { - return scaleColLabels; - } - - /** - * Sets the value of the scaleColLabels property. - * - * @param value - * allowed object is {@link Boolean } - * - */ - public void setScaleColLabels(Boolean value) - { - this.scaleColLabels = value; - } - - /** - * Gets the value of the showAllColLabels property. - * - * @return possible object is {@link Boolean } - * - */ - public Boolean isShowAllColLabels() - { - return showAllColLabels; - } - - /** - * Sets the value of the showAllColLabels property. - * - * @param value - * allowed object is {@link Boolean } - * - */ - public void setShowAllColLabels(Boolean value) - { - this.showAllColLabels = value; - } - - /** - * Gets the value of the autoCalculated property. - * - * @return possible object is {@link Boolean } - * - */ - public boolean isAutoCalculated() - { - if (autoCalculated == null) - { - return false; - } - else - { - return autoCalculated; - } - } - - /** - * Sets the value of the autoCalculated property. - * - * @param value - * allowed object is {@link Boolean } - * - */ - public void setAutoCalculated(Boolean value) - { - this.autoCalculated = value; - } - - /** - * Gets the value of the belowAlignment property. - * - * @return possible object is {@link Boolean } - * - */ - public boolean isBelowAlignment() - { - if (belowAlignment == null) - { - return true; - } - else - { - return belowAlignment; - } - } - - /** - * Sets the value of the belowAlignment property. - * - * @param value - * allowed object is {@link Boolean } - * - */ - public void setBelowAlignment(Boolean value) - { - this.belowAlignment = value; - } - - /** - * Gets the value of the calcId property. - * - * @return possible object is {@link String } - * - */ - public String getCalcId() - { - return calcId; - } - - /** - * Sets the value of the calcId property. - * - * @param value - * allowed object is {@link String } - * - */ - public void setCalcId(String value) - { - this.calcId = value; - } - - /** - * <p>Java class for anonymous complex type. - * - * <p>The following schema fragment specifies the expected content - * contained within this class. - * - * <pre> &lt;complexType&gt; &lt;complexContent&gt; - * &lt;restriction - * base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; &lt;attribute - * name="name" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;attribute name="value" - * type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;/restriction&gt; &lt;/complexContent&gt; - * &lt;/complexType&gt; </pre> - * - * - */ - @XmlAccessorType(XmlAccessType.FIELD) - @XmlType(name = "") - public static class Property - { - - @XmlAttribute(name = "name") - protected String name; - - @XmlAttribute(name = "value") - protected String value; - - /** - * Gets the value of the name property. - * - * @return possible object is {@link String } - * - */ - public String getName() - { - return name; - } - - /** - * Sets the value of the name property. + /** + * Gets the value of the annotationElement property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the annotationElement property. + * + *

+ * For example, to add a new item, do as follows: + * 

+     *    getAnnotationElement().add(newItem);
+     *
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link AnnotationElement } + * + * + */ + public List getAnnotationElement() { + if (annotationElement == null) { + annotationElement = new ArrayList(); + } + return this.annotationElement; + } + + /** + * Gets the value of the label property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getLabel() { + return label; + } + + /** + * Sets the value of the label property. * * @param value - * allowed object is {@link String } + * allowed object is + * {@link String } + * + */ + public void setLabel(String value) { + this.label = value; + } + + /** + * Gets the value of the description property. * + * @return + * possible object is + * {@link String } + * */ - public void setName(String value) - { - this.name = value; + public String getDescription() { + return description; } /** - * Gets the value of the value property. + * Sets the value of the description property. * - * @return possible object is {@link String } + * @param value + * allowed object is + * {@link String } + * + */ + public void setDescription(String value) { + this.description = value; + } + + /** + * Gets the value of the thresholdLine property. * + * @return + * possible object is + * {@link Annotation.ThresholdLine } + * */ - public String getValue() - { - return value; + public Annotation.ThresholdLine getThresholdLine() { + return thresholdLine; } /** - * Sets the value of the value property. + * Sets the value of the thresholdLine property. * * @param value - * allowed object is {@link String } - * - */ - public void setValue(String value) - { - this.value = value; - } - - } - - /** - * <p>Java class for anonymous complex type. - * - * <p>The following schema fragment specifies the expected content - * contained within this class. - * - * <pre> &lt;complexType&gt; &lt;complexContent&gt; - * &lt;restriction - * base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; &lt;attribute - * name="label" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;attribute name="value" - * type="{http://www.w3.org/2001/XMLSchema}float" /&gt; &lt;attribute - * name="colour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt; - * &lt;/restriction&gt; &lt;/complexContent&gt; - * &lt;/complexType&gt; </pre> - * - * - */ - @XmlAccessorType(XmlAccessType.FIELD) - @XmlType(name = "") - public static class ThresholdLine - { - - @XmlAttribute(name = "label") - protected String label; + * allowed object is + * {@link Annotation.ThresholdLine } + * + */ + public void setThresholdLine(Annotation.ThresholdLine value) { + this.thresholdLine = value; + } - @XmlAttribute(name = "value") - protected Float value; + /** + * Gets the value of the property property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the property property. + * + *

+ * For example, to add a new item, do as follows: + * 

+     *    getProperty().add(newItem);
+     *
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link Annotation.Property } + * + * + */ + public List getProperty() { + if (property == null) { + property = new ArrayList(); + } + return this.property; + } - @XmlAttribute(name = "colour") - protected Integer colour; + /** + * Gets the value of the graph property. + * + */ + public boolean isGraph() { + return graph; + } /** - * Gets the value of the label property. + * Sets the value of the graph property. * - * @return possible object is {@link String } + */ + public void setGraph(boolean value) { + this.graph = value; + } + + /** + * Gets the value of the graphType property. * + * @return + * possible object is + * {@link Integer } + * */ - public String getLabel() - { - return label; + public Integer getGraphType() { + return graphType; } /** - * Sets the value of the label property. + * Sets the value of the graphType property. * * @param value - * allowed object is {@link String } + * allowed object is + * {@link Integer } + * + */ + public void setGraphType(Integer value) { + this.graphType = value; + } + + /** + * Gets the value of the sequenceRef property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getSequenceRef() { + return sequenceRef; + } + + /** + * Sets the value of the sequenceRef property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setSequenceRef(String value) { + this.sequenceRef = value; + } + + /** + * Gets the value of the groupRef property. * + * @return + * possible object is + * {@link String } + * + */ + public String getGroupRef() { + return groupRef; + } + + /** + * Sets the value of the groupRef property. + * + * @param value + * allowed object is + * {@link String } + * */ - public void setLabel(String value) - { - this.label = value; + public void setGroupRef(String value) { + this.groupRef = value; } /** - * Gets the value of the value property. + * Gets the value of the graphColour property. * - * @return possible object is {@link Float } + * @return + * possible object is + * {@link Integer } + * + */ + public Integer getGraphColour() { + return graphColour; + } + + /** + * Sets the value of the graphColour property. + * + * @param value + * allowed object is + * {@link Integer } + * + */ + public void setGraphColour(Integer value) { + this.graphColour = value; + } + + /** + * Gets the value of the graphGroup property. * + * @return + * possible object is + * {@link Integer } + * */ - public Float getValue() - { - return value; + public Integer getGraphGroup() { + return graphGroup; } /** - * Sets the value of the value property. + * Sets the value of the graphGroup property. * * @param value - * allowed object is {@link Float } + * allowed object is + * {@link Integer } + * + */ + public void setGraphGroup(Integer value) { + this.graphGroup = value; + } + + /** + * Gets the value of the graphHeight property. * + * @return + * possible object is + * {@link Integer } + * */ - public void setValue(Float value) - { - this.value = value; + public Integer getGraphHeight() { + return graphHeight; } /** - * Gets the value of the colour property. + * Sets the value of the graphHeight property. * - * @return possible object is {@link Integer } + * @param value + * allowed object is + * {@link Integer } + * + */ + public void setGraphHeight(Integer value) { + this.graphHeight = value; + } + + /** + * Gets the value of the id property. * + * @return + * possible object is + * {@link String } + * */ - public Integer getColour() - { - return colour; + public String getId() { + return id; } /** - * Sets the value of the colour property. + * Sets the value of the id property. * * @param value - * allowed object is {@link Integer } + * allowed object is + * {@link String } + * + */ + public void setId(String value) { + this.id = value; + } + + /** + * Gets the value of the scoreOnly property. * + * @return + * possible object is + * {@link Boolean } + * */ - public void setColour(Integer value) - { - this.colour = value; + public boolean isScoreOnly() { + if (scoreOnly == null) { + return false; + } else { + return scoreOnly; + } } - } + /** + * Sets the value of the scoreOnly property. + * + * @param value + * allowed object is + * {@link Boolean } + * + */ + public void setScoreOnly(Boolean value) { + this.scoreOnly = value; + } + + /** + * Gets the value of the score property. + * + * @return + * possible object is + * {@link Double } + * + */ + public Double getScore() { + return score; + } + + /** + * Sets the value of the score property. + * + * @param value + * allowed object is + * {@link Double } + * + */ + public void setScore(Double value) { + this.score = value; + } + + /** + * Gets the value of the visible property. + * + * @return + * possible object is + * {@link Boolean } + * + */ + public Boolean isVisible() { + return visible; + } + + /** + * Sets the value of the visible property. + * + * @param value + * allowed object is + * {@link Boolean } + * + */ + public void setVisible(Boolean value) { + this.visible = value; + } + + /** + * Gets the value of the centreColLabels property. + * + * @return + * possible object is + * {@link Boolean } + * + */ + public Boolean isCentreColLabels() { + return centreColLabels; + } + + /** + * Sets the value of the centreColLabels property. + * + * @param value + * allowed object is + * {@link Boolean } + * + */ + public void setCentreColLabels(Boolean value) { + this.centreColLabels = value; + } + + /** + * Gets the value of the scaleColLabels property. + * + * @return + * possible object is + * {@link Boolean } + * + */ + public Boolean isScaleColLabels() { + return scaleColLabels; + } + + /** + * Sets the value of the scaleColLabels property. + * + * @param value + * allowed object is + * {@link Boolean } + * + */ + public void setScaleColLabels(Boolean value) { + this.scaleColLabels = value; + } + + /** + * Gets the value of the showAllColLabels property. + * + * @return + * possible object is + * {@link Boolean } + * + */ + public Boolean isShowAllColLabels() { + return showAllColLabels; + } + + /** + * Sets the value of the showAllColLabels property. + * + * @param value + * allowed object is + * {@link Boolean } + * + */ + public void setShowAllColLabels(Boolean value) { + this.showAllColLabels = value; + } + + /** + * Gets the value of the autoCalculated property. + * + * @return + * possible object is + * {@link Boolean } + * + */ + public boolean isAutoCalculated() { + if (autoCalculated == null) { + return false; + } else { + return autoCalculated; + } + } + + /** + * Sets the value of the autoCalculated property. + * + * @param value + * allowed object is + * {@link Boolean } + * + */ + public void setAutoCalculated(Boolean value) { + this.autoCalculated = value; + } + + /** + * Gets the value of the belowAlignment property. + * + * @return + * possible object is + * {@link Boolean } + * + */ + public boolean isBelowAlignment() { + if (belowAlignment == null) { + return true; + } else { + return belowAlignment; + } + } + + /** + * Sets the value of the belowAlignment property. + * + * @param value + * allowed object is + * {@link Boolean } + * + */ + public void setBelowAlignment(Boolean value) { + this.belowAlignment = value; + } + + /** + * Gets the value of the calcId property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getCalcId() { + return calcId; + } + + /** + * Sets the value of the calcId property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setCalcId(String value) { + this.calcId = value; + } + + + /** + *

Java class for anonymous complex type. + * + *

The following schema fragment specifies the expected content contained within this class. + * + * 

+     * <complexType>
+     *   <complexContent>
+     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     *       <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *     </restriction>
+     *   </complexContent>
+     * </complexType>
+     *
+ * + * + */ + @XmlAccessorType(XmlAccessType.FIELD) + @XmlType(name = "") + public static class Property { + + @XmlAttribute(name = "name") + protected String name; + @XmlAttribute(name = "value") + protected String value; + + /** + * Gets the value of the name property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getName() { + return name; + } + + /** + * Sets the value of the name property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setName(String value) { + this.name = value; + } + + /** + * Gets the value of the value property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getValue() { + return value; + } + + /** + * Sets the value of the value property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setValue(String value) { + this.value = value; + } + + } + + + /** + *

Java class for anonymous complex type. + * + *

The following schema fragment specifies the expected content contained within this class. + * + * 

+     * <complexType>
+     *   <complexContent>
+     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     *       <attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" />
+     *       <attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" />
+     *     </restriction>
+     *   </complexContent>
+     * </complexType>
+     *
+ * + * + */ + @XmlAccessorType(XmlAccessType.FIELD) + @XmlType(name = "") + public static class ThresholdLine { + + @XmlAttribute(name = "label") + protected String label; + @XmlAttribute(name = "value") + protected Float value; + @XmlAttribute(name = "colour") + protected Integer colour; + + /** + * Gets the value of the label property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getLabel() { + return label; + } + + /** + * Sets the value of the label property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setLabel(String value) { + this.label = value; + } + + /** + * Gets the value of the value property. + * + * @return + * possible object is + * {@link Float } + * + */ + public Float getValue() { + return value; + } + + /** + * Sets the value of the value property. + * + * @param value + * allowed object is + * {@link Float } + * + */ + public void setValue(Float value) { + this.value = value; + } + + /** + * Gets the value of the colour property. + * + * @return + * possible object is + * {@link Integer } + * + */ + public Integer getColour() { + return colour; + } + + /** + * Sets the value of the colour property. + * + * @param value + * allowed object is + * {@link Integer } + * + */ + public void setColour(Integer value) { + this.colour = value; + } + + } }