X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FAnnotation.java;h=8c07465f944fa9cd7d36fb2e28c3ee6a8f706bdc;hb=0de37d1a047209510bab82225109ae2a47931f79;hp=1751f50a69af4d602fd496430c1de088cbf147a2;hpb=7b32d373b60d0af55481cfd6d377b2cc1ec035c0;p=jalview.git

diff --git a/src/jalview/xml/binding/jalview/Annotation.java b/src/jalview/xml/binding/jalview/Annotation.java
index 1751f50..8c07465 100644
--- a/src/jalview/xml/binding/jalview/Annotation.java
+++ b/src/jalview/xml/binding/jalview/Annotation.java
@@ -1,8 +1,8 @@
 //
-// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 
-// See https://eclipse-ee4j.github.io/jaxb-ri 
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
 // Any modifications to this file will be lost upon recompilation of the source schema. 
-// Generated on: 2022.02.07 at 04:44:47 PM GMT 
+// Generated on: 2023.01.31 at 04:07:08 PM GMT 
 //
 
 
@@ -19,61 +19,61 @@ import javax.xml.bind.annotation.XmlType;
 
 
 /**
- * &lt;p&gt;Java class for anonymous complex type.
+ * <p>Java class for anonymous complex type.
  * 
- * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
  * 
- * &lt;pre&gt;
- * &amp;lt;complexType&amp;gt;
- *   &amp;lt;complexContent&amp;gt;
- *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
- *       &amp;lt;sequence&amp;gt;
- *         &amp;lt;element ref="{www.vamsas.ac.uk/jalview/version2}annotationElement" maxOccurs="unbounded" minOccurs="0"/&amp;gt;
- *         &amp;lt;element name="label" type="{http://www.w3.org/2001/XMLSchema}string"/&amp;gt;
- *         &amp;lt;element name="description" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&amp;gt;
- *         &amp;lt;element name="thresholdLine" minOccurs="0"&amp;gt;
- *           &amp;lt;complexType&amp;gt;
- *             &amp;lt;complexContent&amp;gt;
- *               &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
- *                 &amp;lt;attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- *                 &amp;lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
- *                 &amp;lt;attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
- *               &amp;lt;/restriction&amp;gt;
- *             &amp;lt;/complexContent&amp;gt;
- *           &amp;lt;/complexType&amp;gt;
- *         &amp;lt;/element&amp;gt;
- *         &amp;lt;element name="property" maxOccurs="unbounded" minOccurs="0"&amp;gt;
- *           &amp;lt;complexType&amp;gt;
- *             &amp;lt;complexContent&amp;gt;
- *               &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
- *                 &amp;lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- *                 &amp;lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- *               &amp;lt;/restriction&amp;gt;
- *             &amp;lt;/complexContent&amp;gt;
- *           &amp;lt;/complexType&amp;gt;
- *         &amp;lt;/element&amp;gt;
- *       &amp;lt;/sequence&amp;gt;
- *       &amp;lt;attribute name="graph" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
- *       &amp;lt;attribute name="graphType" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
- *       &amp;lt;attribute name="sequenceRef" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- *       &amp;lt;attribute name="groupRef" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- *       &amp;lt;attribute name="graphColour" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
- *       &amp;lt;attribute name="graphGroup" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
- *       &amp;lt;attribute name="graphHeight" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
- *       &amp;lt;attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- *       &amp;lt;attribute name="scoreOnly" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&amp;gt;
- *       &amp;lt;attribute name="score" type="{http://www.w3.org/2001/XMLSchema}double" /&amp;gt;
- *       &amp;lt;attribute name="visible" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
- *       &amp;lt;attribute name="centreColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
- *       &amp;lt;attribute name="scaleColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
- *       &amp;lt;attribute name="showAllColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
- *       &amp;lt;attribute name="autoCalculated" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&amp;gt;
- *       &amp;lt;attribute name="belowAlignment" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" /&amp;gt;
- *       &amp;lt;attribute name="calcId" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- *     &amp;lt;/restriction&amp;gt;
- *   &amp;lt;/complexContent&amp;gt;
- * &amp;lt;/complexType&amp;gt;
- * &lt;/pre&gt;
+ * <pre>
+ * &lt;complexType>
+ *   &lt;complexContent>
+ *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       &lt;sequence>
+ *         &lt;element ref="{www.vamsas.ac.uk/jalview/version2}annotationElement" maxOccurs="unbounded" minOccurs="0"/>
+ *         &lt;element name="label" type="{http://www.w3.org/2001/XMLSchema}string"/>
+ *         &lt;element name="description" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ *         &lt;element name="thresholdLine" minOccurs="0">
+ *           &lt;complexType>
+ *             &lt;complexContent>
+ *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *                 &lt;attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *                 &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" />
+ *                 &lt;attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *               &lt;/restriction>
+ *             &lt;/complexContent>
+ *           &lt;/complexType>
+ *         &lt;/element>
+ *         &lt;element name="property" maxOccurs="unbounded" minOccurs="0">
+ *           &lt;complexType>
+ *             &lt;complexContent>
+ *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *                 &lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *                 &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *               &lt;/restriction>
+ *             &lt;/complexContent>
+ *           &lt;/complexType>
+ *         &lt;/element>
+ *       &lt;/sequence>
+ *       &lt;attribute name="graph" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *       &lt;attribute name="graphType" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *       &lt;attribute name="sequenceRef" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *       &lt;attribute name="groupRef" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *       &lt;attribute name="graphColour" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *       &lt;attribute name="graphGroup" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *       &lt;attribute name="graphHeight" type="{http://www.w3.org/2001/XMLSchema}int" />
+ *       &lt;attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *       &lt;attribute name="scoreOnly" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ *       &lt;attribute name="score" type="{http://www.w3.org/2001/XMLSchema}double" />
+ *       &lt;attribute name="visible" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *       &lt;attribute name="centreColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *       &lt;attribute name="scaleColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *       &lt;attribute name="showAllColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *       &lt;attribute name="autoCalculated" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ *       &lt;attribute name="belowAlignment" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" />
+ *       &lt;attribute name="calcId" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *     &lt;/restriction>
+ *   &lt;/complexContent>
+ * &lt;/complexType>
+ * </pre>
  * 
  * 
  */
@@ -132,20 +132,20 @@ public class Annotation {
     /**
      * Gets the value of the annotationElement property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the annotationElement property.
+     * This is why there is not a <CODE>set</CODE> method for the annotationElement property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getAnnotationElement().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link AnnotationElement }
      * 
@@ -233,20 +233,20 @@ public class Annotation {
     /**
      * Gets the value of the property property.
      * 
-     * &lt;p&gt;
+     * <p>
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the property property.
+     * This is why there is not a <CODE>set</CODE> method for the property property.
      * 
-     * &lt;p&gt;
+     * <p>
      * For example, to add a new item, do as follows:
-     * &lt;pre&gt;
+     * <pre>
      *    getProperty().add(newItem);
-     * &lt;/pre&gt;
+     * </pre>
      * 
      * 
-     * &lt;p&gt;
+     * <p>
      * Objects of the following type(s) are allowed in the list
      * {@link Annotation.Property }
      * 
@@ -673,20 +673,20 @@ public class Annotation {
 
 
     /**
-     * &lt;p&gt;Java class for anonymous complex type.
+     * <p>Java class for anonymous complex type.
      * 
-     * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
+     * <p>The following schema fragment specifies the expected content contained within this class.
      * 
-     * &lt;pre&gt;
-     * &amp;lt;complexType&amp;gt;
-     *   &amp;lt;complexContent&amp;gt;
-     *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
-     *       &amp;lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
-     *       &amp;lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
-     *     &amp;lt;/restriction&amp;gt;
-     *   &amp;lt;/complexContent&amp;gt;
-     * &amp;lt;/complexType&amp;gt;
-     * &lt;/pre&gt;
+     * <pre>
+     * &lt;complexType>
+     *   &lt;complexContent>
+     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     *       &lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *     &lt;/restriction>
+     *   &lt;/complexContent>
+     * &lt;/complexType>
+     * </pre>
      * 
      * 
      */
@@ -751,21 +751,21 @@ public class Annotation {
 
 
     /**
-     * &lt;p&gt;Java class for anonymous complex type.
+     * <p>Java class for anonymous complex type.
      * 
-     * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
+     * <p>The following schema fragment specifies the expected content contained within this class.
      * 
-     * &lt;pre&gt;
-     * &amp;lt;complexType&amp;gt;
-     *   &amp;lt;complexContent&amp;gt;
-     *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
-     *       &amp;lt;attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
-     *       &amp;lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
-     *       &amp;lt;attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
-     *     &amp;lt;/restriction&amp;gt;
-     *   &amp;lt;/complexContent&amp;gt;
-     * &amp;lt;/complexType&amp;gt;
-     * &lt;/pre&gt;
+     * <pre>
+     * &lt;complexType>
+     *   &lt;complexContent>
+     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     *       &lt;attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" />
+     *       &lt;attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" />
+     *     &lt;/restriction>
+     *   &lt;/complexContent>
+     * &lt;/complexType>
+     * </pre>
      * 
      * 
      */