X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FMatrixType.java;h=34d115884a7035c0134f56b21466bdc71f43f80c;hb=893f21fe8df6a9d47ced8140e3ba75f03407be00;hp=ac79fa84f326fb9232a945bb0ab6b1b206319a15;hpb=f3d6a13271e3f34dfb4e40d6a2a7df1d392f8014;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/MatrixType.java b/src/jalview/xml/binding/jalview/MatrixType.java index ac79fa8..34d1158 100644 --- a/src/jalview/xml/binding/jalview/MatrixType.java +++ b/src/jalview/xml/binding/jalview/MatrixType.java @@ -1,8 +1,8 @@ // -// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 -// See http://java.sun.com/xml/jaxb +// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 +// See https://eclipse-ee4j.github.io/jaxb-ri // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2023.05.13 at 06:58:41 PM BST +// Generated on: 2023.11.01 at 07:03:09 PM GMT // @@ -19,31 +19,36 @@ import javax.xml.bind.annotation.XmlType; /** - *

Java class for MatrixType complex type. + * Represents matrix data imported to Jalview, and the + * results of any derived calculations (independent of a particular + * view + * on the matrix). + * * - *

The following schema fragment specifies the expected content contained within this class. + * <p>Java class for MatrixType complex type. * - * 

- * <complexType name="MatrixType">
- *   <complexContent>
- *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *       <sequence>
- *         <element name="elements" type="{http://www.w3.org/2001/XMLSchema}string"/>
- *         <element name="groups" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- *         <element name="newick" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- *         <element name="property" type="{www.vamsas.ac.uk/jalview/version2}property" maxOccurs="unbounded" minOccurs="0"/>
- *         <element name="mapping" type="{www.vamsas.ac.uk/jalview/version2}mapListType" minOccurs="0"/>
- *       </sequence>
- *       <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- *       <attribute name="rows" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- *       <attribute name="cols" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- *       <attribute name="treeMethod" type="{http://www.w3.org/2001/XMLSchema}string" />
- *       <attribute name="cutHeight" type="{http://www.w3.org/2001/XMLSchema}double" />
- *       <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
- *     </restriction>
- *   </complexContent>
- * </complexType>
- *
+ * <p>The following schema fragment specifies the expected content contained within this class. + * + * <pre> + * &lt;complexType name="MatrixType"&gt; + * &lt;complexContent&gt; + * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; + * &lt;sequence&gt; + * &lt;element name="elements" type="{http://www.w3.org/2001/XMLSchema}string"/&gt; + * &lt;element name="groups" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt; + * &lt;element name="newick" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt; + * &lt;element name="property" type="{www.vamsas.ac.uk/jalview/version2}property" maxOccurs="unbounded" minOccurs="0"/&gt; + * &lt;/sequence&gt; + * &lt;attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;attribute name="rows" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt; + * &lt;attribute name="cols" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt; + * &lt;attribute name="treeMethod" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;attribute name="cutHeight" type="{http://www.w3.org/2001/XMLSchema}double" /&gt; + * &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;/restriction&gt; + * &lt;/complexContent&gt; + * &lt;/complexType&gt; + * </pre> * * */ @@ -52,8 +57,7 @@ import javax.xml.bind.annotation.XmlType; "elements", "groups", "newick", - "property", - "mapping" + "property" }) public class MatrixType { @@ -62,7 +66,6 @@ public class MatrixType { protected List groups; protected List newick; protected List property; - protected MapListType mapping; @XmlAttribute(name = "type", required = true) protected String type; @XmlAttribute(name = "rows", required = true) @@ -73,7 +76,7 @@ public class MatrixType { protected String treeMethod; @XmlAttribute(name = "cutHeight") protected Double cutHeight; - @XmlAttribute(name = "id") + @XmlAttribute(name = "id", required = true) protected String id; /** @@ -103,20 +106,20 @@ public class MatrixType { /** * Gets the value of the groups property. * - *

+ * <p> * This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. - * This is why there is not a set method for the groups property. + * This is why there is not a <CODE>set</CODE> method for the groups property. * - *

+ * <p> * For example, to add a new item, do as follows: - * 

+     * <pre>
      *    getGroups().add(newItem);
-     *
+ * </pre> * * - *

+ * <p> * Objects of the following type(s) are allowed in the list * {@link String } * @@ -132,20 +135,20 @@ public class MatrixType { /** * Gets the value of the newick property. * - *

+ * <p> * This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. - * This is why there is not a set method for the newick property. + * This is why there is not a <CODE>set</CODE> method for the newick property. * - *

+ * <p> * For example, to add a new item, do as follows: - * 

+     * <pre>
      *    getNewick().add(newItem);
-     *
+ * </pre> * * - *

+ * <p> * Objects of the following type(s) are allowed in the list * {@link String } * @@ -161,20 +164,20 @@ public class MatrixType { /** * Gets the value of the property property. * - *

+ * <p> * This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. - * This is why there is not a set method for the property property. + * This is why there is not a <CODE>set</CODE> method for the property property. * - *

+ * <p> * For example, to add a new item, do as follows: - * 

+     * <pre>
      *    getProperty().add(newItem);
-     *
+ * </pre> * * - *

+ * <p> * Objects of the following type(s) are allowed in the list * {@link Property } * @@ -188,30 +191,6 @@ public class MatrixType { } /** - * Gets the value of the mapping property. - * - * @return - * possible object is - * {@link MapListType } - * - */ - public MapListType getMapping() { - return mapping; - } - - /** - * Sets the value of the mapping property. - * - * @param value - * allowed object is - * {@link MapListType } - * - */ - public void setMapping(MapListType value) { - this.mapping = value; - } - - /** * Gets the value of the type property. * * @return