X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FMatrixType.java;h=c4055973989b7520d2aa7c2c3357affb7cfb1d1f;hb=beb2fee66dde629e3bbb7febb38d0116e1a64df2;hp=ac79fa84f326fb9232a945bb0ab6b1b206319a15;hpb=f3d6a13271e3f34dfb4e40d6a2a7df1d392f8014;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/MatrixType.java b/src/jalview/xml/binding/jalview/MatrixType.java index ac79fa8..c405597 100644 --- a/src/jalview/xml/binding/jalview/MatrixType.java +++ b/src/jalview/xml/binding/jalview/MatrixType.java @@ -19,9 +19,12 @@ import javax.xml.bind.annotation.XmlType; /** - *
Java class for MatrixType complex type. + *
+ * Java class for MatrixType complex type. * - *
The following schema fragment specifies the expected content contained within this class. + *
+ * The following schema fragment specifies the expected content contained within + * this class. * *
* <complexType name="MatrixType"> @@ -48,311 +51,317 @@ import javax.xml.bind.annotation.XmlType; * */ @XmlAccessorType(XmlAccessType.FIELD) -@XmlType(name = "MatrixType", propOrder = { - "elements", - "groups", - "newick", - "property", - "mapping" -}) -public class MatrixType { - - @XmlElement(required = true) - protected String elements; - protected Listgroups; - protected List newick; - protected List property; - protected MapListType mapping; - @XmlAttribute(name = "type", required = true) - protected String type; - @XmlAttribute(name = "rows", required = true) - protected BigInteger rows; - @XmlAttribute(name = "cols", required = true) - protected BigInteger cols; - @XmlAttribute(name = "treeMethod") - protected String treeMethod; - @XmlAttribute(name = "cutHeight") - protected Double cutHeight; - @XmlAttribute(name = "id") - protected String id; - - /** - * Gets the value of the elements property. - * - * @return - * possible object is - * {@link String } - * - */ - public String getElements() { - return elements; - } +@XmlType( + name = "MatrixType", + propOrder = + { "elements", "groups", "newick", "property", "mapping" }) +public class MatrixType +{ - /** - * Sets the value of the elements property. - * - * @param value - * allowed object is - * {@link String } - * - */ - public void setElements(String value) { - this.elements = value; - } + @XmlElement(required = true) + protected String elements; - /** - * Gets the value of the groups property. - * - * - * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a
set
method for the groups property. - * - *- * For example, to add a new item, do as follows: - *
- * getGroups().add(newItem); - *- * - * - *- * Objects of the following type(s) are allowed in the list - * {@link String } - * - * - */ - public List
getGroups() { - if (groups == null) { - groups = new ArrayList (); - } - return this.groups; - } + protected List groups; - /** - * Gets the value of the newick property. - * - * - * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a
set
method for the newick property. - * - *- * For example, to add a new item, do as follows: - *
- * getNewick().add(newItem); - *- * - * - *- * Objects of the following type(s) are allowed in the list - * {@link String } - * - * - */ - public List
getNewick() { - if (newick == null) { - newick = new ArrayList (); - } - return this.newick; - } + protected List newick; - /** - * Gets the value of the property property. - * - * - * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a
set
method for the property property. - * - *- * For example, to add a new item, do as follows: - *
- * getProperty().add(newItem); - *- * - * - *- * Objects of the following type(s) are allowed in the list - * {@link Property } - * - * - */ - public List
getProperty() { - if (property == null) { - property = new ArrayList (); - } - return this.property; - } + protected List property; - /** - * Gets the value of the mapping property. - * - * @return - * possible object is - * {@link MapListType } - * - */ - public MapListType getMapping() { - return mapping; - } + protected MapListType mapping; - /** - * Sets the value of the mapping property. - * - * @param value - * allowed object is - * {@link MapListType } - * - */ - public void setMapping(MapListType value) { - this.mapping = value; - } + @XmlAttribute(name = "type", required = true) + protected String type; - /** - * Gets the value of the type property. - * - * @return - * possible object is - * {@link String } - * - */ - public String getType() { - return type; - } + @XmlAttribute(name = "rows", required = true) + protected BigInteger rows; - /** - * Sets the value of the type property. - * - * @param value - * allowed object is - * {@link String } - * - */ - public void setType(String value) { - this.type = value; - } + @XmlAttribute(name = "cols", required = true) + protected BigInteger cols; - /** - * Gets the value of the rows property. - * - * @return - * possible object is - * {@link BigInteger } - * - */ - public BigInteger getRows() { - return rows; - } + @XmlAttribute(name = "treeMethod") + protected String treeMethod; - /** - * Sets the value of the rows property. - * - * @param value - * allowed object is - * {@link BigInteger } - * - */ - public void setRows(BigInteger value) { - this.rows = value; - } + @XmlAttribute(name = "cutHeight") + protected Double cutHeight; - /** - * Gets the value of the cols property. - * - * @return - * possible object is - * {@link BigInteger } - * - */ - public BigInteger getCols() { - return cols; - } + @XmlAttribute(name = "id") + protected String id; - /** - * Sets the value of the cols property. - * - * @param value - * allowed object is - * {@link BigInteger } - * - */ - public void setCols(BigInteger value) { - this.cols = value; - } + /** + * Gets the value of the elements property. + * + * @return possible object is {@link String } + * + */ + public String getElements() + { + return elements; + } - /** - * Gets the value of the treeMethod property. - * - * @return - * possible object is - * {@link String } - * - */ - public String getTreeMethod() { - return treeMethod; - } + /** + * Sets the value of the elements property. + * + * @param value + * allowed object is {@link String } + * + */ + public void setElements(String value) + { + this.elements = value; + } - /** - * Sets the value of the treeMethod property. - * - * @param value - * allowed object is - * {@link String } - * - */ - public void setTreeMethod(String value) { - this.treeMethod = value; + /** + * Gets the value of the groups property. + * + * + * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a
set
method + * for the groups property. + * + *+ * For example, to add a new item, do as follows: + * + *
+ * getGroups().add(newItem); + *+ * + * + *+ * Objects of the following type(s) are allowed in the list {@link String } + * + * + */ + public List
getGroups() + { + if (groups == null) + { + groups = new ArrayList (); } + return this.groups; + } - /** - * Gets the value of the cutHeight property. - * - * @return - * possible object is - * {@link Double } - * - */ - public Double getCutHeight() { - return cutHeight; + /** + * Gets the value of the newick property. + * + * + * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a
set
method + * for the newick property. + * + *+ * For example, to add a new item, do as follows: + * + *
+ * getNewick().add(newItem); + *+ * + * + *+ * Objects of the following type(s) are allowed in the list {@link String } + * + * + */ + public List
getNewick() + { + if (newick == null) + { + newick = new ArrayList (); } + return this.newick; + } - /** - * Sets the value of the cutHeight property. - * - * @param value - * allowed object is - * {@link Double } - * - */ - public void setCutHeight(Double value) { - this.cutHeight = value; + /** + * Gets the value of the property property. + * + * + * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a
set
method + * for the property property. + * + *+ * For example, to add a new item, do as follows: + * + *
+ * getProperty().add(newItem); + *+ * + * + *+ * Objects of the following type(s) are allowed in the list {@link Property } + * + * + */ + public List
getProperty() + { + if (property == null) + { + property = new ArrayList (); } + return this.property; + } - /** - * Gets the value of the id property. - * - * @return - * possible object is - * {@link String } - * - */ - public String getId() { - return id; - } + /** + * Gets the value of the mapping property. + * + * @return possible object is {@link MapListType } + * + */ + public MapListType getMapping() + { + return mapping; + } - /** - * Sets the value of the id property. - * - * @param value - * allowed object is - * {@link String } - * - */ - public void setId(String value) { - this.id = value; - } + /** + * Sets the value of the mapping property. + * + * @param value + * allowed object is {@link MapListType } + * + */ + public void setMapping(MapListType value) + { + this.mapping = value; + } + + /** + * Gets the value of the type property. + * + * @return possible object is {@link String } + * + */ + public String getType() + { + return type; + } + + /** + * Sets the value of the type property. + * + * @param value + * allowed object is {@link String } + * + */ + public void setType(String value) + { + this.type = value; + } + + /** + * Gets the value of the rows property. + * + * @return possible object is {@link BigInteger } + * + */ + public BigInteger getRows() + { + return rows; + } + + /** + * Sets the value of the rows property. + * + * @param value + * allowed object is {@link BigInteger } + * + */ + public void setRows(BigInteger value) + { + this.rows = value; + } + + /** + * Gets the value of the cols property. + * + * @return possible object is {@link BigInteger } + * + */ + public BigInteger getCols() + { + return cols; + } + + /** + * Sets the value of the cols property. + * + * @param value + * allowed object is {@link BigInteger } + * + */ + public void setCols(BigInteger value) + { + this.cols = value; + } + + /** + * Gets the value of the treeMethod property. + * + * @return possible object is {@link String } + * + */ + public String getTreeMethod() + { + return treeMethod; + } + + /** + * Sets the value of the treeMethod property. + * + * @param value + * allowed object is {@link String } + * + */ + public void setTreeMethod(String value) + { + this.treeMethod = value; + } + + /** + * Gets the value of the cutHeight property. + * + * @return possible object is {@link Double } + * + */ + public Double getCutHeight() + { + return cutHeight; + } + + /** + * Sets the value of the cutHeight property. + * + * @param value + * allowed object is {@link Double } + * + */ + public void setCutHeight(Double value) + { + this.cutHeight = value; + } + + /** + * Gets the value of the id property. + * + * @return possible object is {@link String } + * + */ + public String getId() + { + return id; + } + + /** + * Sets the value of the id property. + * + * @param value + * allowed object is {@link String } + * + */ + public void setId(String value) + { + this.id = value; + } }