X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FObjectFactory.java;h=46ae594f2633b3f1626853b7cba8aeb671588dc7;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=2c8d5130b445eaac1fa6130dea200e9aa8346267;hpb=587d42166f0f5febf2e1c3f14d11540e3cb1452f;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/ObjectFactory.java b/src/jalview/xml/binding/jalview/ObjectFactory.java index 2c8d513..46ae594 100644 --- a/src/jalview/xml/binding/jalview/ObjectFactory.java +++ b/src/jalview/xml/binding/jalview/ObjectFactory.java @@ -1,11 +1,10 @@ // -// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 -// See http://java.sun.com/xml/jaxb +// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 +// See https://eclipse-ee4j.github.io/jaxb-ri // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2018.09.18 at 04:36:20 PM BST +// Generated on: 2021.08.30 at 11:05:22 AM BST // - package jalview.xml.binding.jalview; import javax.xml.bind.JAXBElement; @@ -13,402 +12,560 @@ import javax.xml.bind.annotation.XmlElementDecl; import javax.xml.bind.annotation.XmlRegistry; import javax.xml.namespace.QName; - /** - * This object contains factory methods for each - * Java content interface and Java element interface - * generated in the jalview.xml.binding.jalview package. - *

An ObjectFactory allows you to programatically - * construct new instances of the Java representation - * for XML content. The Java representation of XML - * content can consist of schema derived interfaces - * and classes representing the binding of schema - * type definitions, element declarations and model - * groups. Factory methods for each of these are - * provided in this class. + * This object contains factory methods for each Java content interface and Java + * element interface generated in the jalview.xml.binding.jalview package. + * <p>An ObjectFactory allows you to programatically construct new + * instances of the Java representation for XML content. The Java representation + * of XML content can consist of schema derived interfaces and classes + * representing the binding of schema type definitions, element declarations and + * model groups. Factory methods for each of these are provided in this class. * */ @XmlRegistry -public class ObjectFactory { - - private final static QName _JalviewModel_QNAME = new QName("www.jalview.org", "JalviewModel"); - private final static QName _JalviewUserColours_QNAME = new QName("www.jalview.org/colours", "JalviewUserColours"); - - /** - * Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: jalview.xml.binding.jalview - * - */ - public ObjectFactory() { - } - - /** - * Create an instance of {@link AlcodonFrame } - * - */ - public AlcodonFrame createAlcodonFrame() { - return new AlcodonFrame(); - } - - /** - * Create an instance of {@link MapListType } - * - */ - public MapListType createMapListType() { - return new MapListType(); - } - - /** - * Create an instance of {@link Sequence } - * - */ - public Sequence createSequence() { - return new Sequence(); - } - - /** - * Create an instance of {@link Annotation } - * - */ - public Annotation createAnnotation() { - return new Annotation(); - } - - /** - * Create an instance of {@link SequenceSet } - * - */ - public SequenceSet createSequenceSet() { - return new SequenceSet(); - } - - /** - * Create an instance of {@link FeatureMatcherSet } - * - */ - public FeatureMatcherSet createFeatureMatcherSet() { - return new FeatureMatcherSet(); - } - - /** - * Create an instance of {@link JalviewUserColours } - * - */ - public JalviewUserColours createJalviewUserColours() { - return new JalviewUserColours(); - } - - /** - * Create an instance of {@link Pdbentry } - * - */ - public Pdbentry createPdbentry() { - return new Pdbentry(); - } - - /** - * Create an instance of {@link Feature } - * - */ - public Feature createFeature() { - return new Feature(); - } - - /** - * Create an instance of {@link JalviewModel } - * - */ - public JalviewModel createJalviewModel() { - return new JalviewModel(); - } - - /** - * Create an instance of {@link JalviewModel.FeatureSettings } - * - */ - public JalviewModel.FeatureSettings createJalviewModelFeatureSettings() { - return new JalviewModel.FeatureSettings(); - } - - /** - * Create an instance of {@link JalviewModel.Viewport } - * - */ - public JalviewModel.Viewport createJalviewModelViewport() { - return new JalviewModel.Viewport(); - } - - /** - * Create an instance of {@link JalviewModel.JSeq } - * - */ - public JalviewModel.JSeq createJalviewModelJSeq() { - return new JalviewModel.JSeq(); - } - - /** - * Create an instance of {@link JalviewModel.JSeq.RnaViewer } - * - */ - public JalviewModel.JSeq.RnaViewer createJalviewModelJSeqRnaViewer() { - return new JalviewModel.JSeq.RnaViewer(); - } - - /** - * Create an instance of {@link JalviewModel.JSeq.Pdbids } - * - */ - public JalviewModel.JSeq.Pdbids createJalviewModelJSeqPdbids() { - return new JalviewModel.JSeq.Pdbids(); - } - - /** - * Create an instance of {@link AnnotationColourScheme } - * - */ - public AnnotationColourScheme createAnnotationColourScheme() { - return new AnnotationColourScheme(); - } - - /** - * Create an instance of {@link AlcodonFrame.Alcodon } - * - */ - public AlcodonFrame.Alcodon createAlcodonFrameAlcodon() { - return new AlcodonFrame.Alcodon(); - } - - /** - * Create an instance of {@link AlcodonFrame.AlcodMap } - * - */ - public AlcodonFrame.AlcodMap createAlcodonFrameAlcodMap() { - return new AlcodonFrame.AlcodMap(); - } - - /** - * Create an instance of {@link AnnotationElement } - * - */ - public AnnotationElement createAnnotationElement() { - return new AnnotationElement(); - } - - /** - * Create an instance of {@link Mapping } - * - */ - public Mapping createMapping() { - return new Mapping(); - } - - /** - * Create an instance of {@link MapListType.MapListFrom } - * - */ - public MapListType.MapListFrom createMapListTypeMapListFrom() { - return new MapListType.MapListFrom(); - } - - /** - * Create an instance of {@link MapListType.MapListTo } - * - */ - public MapListType.MapListTo createMapListTypeMapListTo() { - return new MapListType.MapListTo(); - } - - /** - * Create an instance of {@link SequenceType } - * - */ - public SequenceType createSequenceType() { - return new SequenceType(); - } - - /** - * Create an instance of {@link Sequence.DBRef } - * - */ - public Sequence.DBRef createSequenceDBRef() { - return new Sequence.DBRef(); - } - - /** - * Create an instance of {@link Annotation.ThresholdLine } - * - */ - public Annotation.ThresholdLine createAnnotationThresholdLine() { - return new Annotation.ThresholdLine(); - } - - /** - * Create an instance of {@link Annotation.Property } - * - */ - public Annotation.Property createAnnotationProperty() { - return new Annotation.Property(); - } - - /** - * Create an instance of {@link SequenceSet.SequenceSetProperties } - * - */ - public SequenceSet.SequenceSetProperties createSequenceSetSequenceSetProperties() { - return new SequenceSet.SequenceSetProperties(); - } - - /** - * Create an instance of {@link VAMSAS } - * - */ - public VAMSAS createVAMSAS() { - return new VAMSAS(); - } - - /** - * Create an instance of {@link FeatureMatcher } - * - */ - public FeatureMatcher createFeatureMatcher() { - return new FeatureMatcher(); - } - - /** - * Create an instance of {@link WebServiceParameterSet } - * - */ - public WebServiceParameterSet createWebServiceParameterSet() { - return new WebServiceParameterSet(); - } - - /** - * Create an instance of {@link FeatureMatcherSet.CompoundMatcher } - * - */ - public FeatureMatcherSet.CompoundMatcher createFeatureMatcherSetCompoundMatcher() { - return new FeatureMatcherSet.CompoundMatcher(); - } - - /** - * Create an instance of {@link JalviewUserColours.Colour } - * - */ - public JalviewUserColours.Colour createJalviewUserColoursColour() { - return new JalviewUserColours.Colour(); - } - - /** - * Create an instance of {@link JalviewUserColours.Filter } - * - */ - public JalviewUserColours.Filter createJalviewUserColoursFilter() { - return new JalviewUserColours.Filter(); - } - - /** - * Create an instance of {@link Pdbentry.Property } - * - */ - public Pdbentry.Property createPdbentryProperty() { - return new Pdbentry.Property(); - } - - /** - * Create an instance of {@link Feature.OtherData } - * - */ - public Feature.OtherData createFeatureOtherData() { - return new Feature.OtherData(); - } - - /** - * Create an instance of {@link JalviewModel.JGroup } - * - */ - public JalviewModel.JGroup createJalviewModelJGroup() { - return new JalviewModel.JGroup(); - } - - /** - * Create an instance of {@link JalviewModel.UserColours } - * - */ - public JalviewModel.UserColours createJalviewModelUserColours() { - return new JalviewModel.UserColours(); - } - - /** - * Create an instance of {@link JalviewModel.Tree } - * - */ - public JalviewModel.Tree createJalviewModelTree() { - return new JalviewModel.Tree(); - } - - /** - * Create an instance of {@link JalviewModel.FeatureSettings.Setting } - * - */ - public JalviewModel.FeatureSettings.Setting createJalviewModelFeatureSettingsSetting() { - return new JalviewModel.FeatureSettings.Setting(); - } - - /** - * Create an instance of {@link JalviewModel.FeatureSettings.Group } - * - */ - public JalviewModel.FeatureSettings.Group createJalviewModelFeatureSettingsGroup() { - return new JalviewModel.FeatureSettings.Group(); - } - - /** - * Create an instance of {@link JalviewModel.Viewport.HiddenColumns } - * - */ - public JalviewModel.Viewport.HiddenColumns createJalviewModelViewportHiddenColumns() { - return new JalviewModel.Viewport.HiddenColumns(); - } - - /** - * Create an instance of {@link JalviewModel.Viewport.CalcIdParam } - * - */ - public JalviewModel.Viewport.CalcIdParam createJalviewModelViewportCalcIdParam() { - return new JalviewModel.Viewport.CalcIdParam(); - } - - /** - * Create an instance of {@link JalviewModel.JSeq.RnaViewer.SecondaryStructure } - * - */ - public JalviewModel.JSeq.RnaViewer.SecondaryStructure createJalviewModelJSeqRnaViewerSecondaryStructure() { - return new JalviewModel.JSeq.RnaViewer.SecondaryStructure(); - } - - /** - * Create an instance of {@link JalviewModel.JSeq.Pdbids.StructureState } - * - */ - public JalviewModel.JSeq.Pdbids.StructureState createJalviewModelJSeqPdbidsStructureState() { - return new JalviewModel.JSeq.Pdbids.StructureState(); - } - - /** - * Create an instance of {@link JAXBElement }{@code <}{@link JalviewModel }{@code >}} - * - */ - @XmlElementDecl(namespace = "www.jalview.org", name = "JalviewModel") - public JAXBElement createJalviewModel(JalviewModel value) { - return new JAXBElement(_JalviewModel_QNAME, JalviewModel.class, null, value); - } - - /** - * Create an instance of {@link JAXBElement }{@code <}{@link JalviewUserColours }{@code >}} - * - */ - @XmlElementDecl(namespace = "www.jalview.org/colours", name = "JalviewUserColours") - public JAXBElement createJalviewUserColours(JalviewUserColours value) { - return new JAXBElement(_JalviewUserColours_QNAME, JalviewUserColours.class, null, value); - } +public class ObjectFactory +{ + + private final static QName _JalviewModel_QNAME = new QName( + "www.jalview.org", "JalviewModel"); + + private final static QName _JalviewUserColours_QNAME = new QName( + "www.jalview.org/colours", "JalviewUserColours"); + + private final static QName _WebServiceParameterSet_QNAME = new QName( + "www.jalview.org/xml/wsparamset", "WebServiceParameterSet"); + + /** + * Create a new ObjectFactory that can be used to create new instances of + * schema derived classes for package: jalview.xml.binding.jalview + * + */ + public ObjectFactory() + { + } + + /** + * Create an instance of {@link MapListType } + * + */ + public MapListType createMapListType() + { + return new MapListType(); + } + + /** + * Create an instance of {@link Sequence } + * + */ + public Sequence createSequence() + { + return new Sequence(); + } + + /** + * Create an instance of {@link AlcodonFrame } + * + */ + public AlcodonFrame createAlcodonFrame() + { + return new AlcodonFrame(); + } + + /** + * Create an instance of {@link Annotation } + * + */ + public Annotation createAnnotation() + { + return new Annotation(); + } + + /** + * Create an instance of {@link SequenceSet } + * + */ + public SequenceSet createSequenceSet() + { + return new SequenceSet(); + } + + /** + * Create an instance of {@link FeatureMatcherSet } + * + */ + public FeatureMatcherSet createFeatureMatcherSet() + { + return new FeatureMatcherSet(); + } + + /** + * Create an instance of {@link JalviewUserColours } + * + */ + public JalviewUserColours createJalviewUserColours() + { + return new JalviewUserColours(); + } + + /** + * Create an instance of {@link Pdbentry } + * + */ + public Pdbentry createPdbentry() + { + return new Pdbentry(); + } + + /** + * Create an instance of {@link Feature } + * + */ + public Feature createFeature() + { + return new Feature(); + } + + /** + * Create an instance of {@link JalviewModel } + * + */ + public JalviewModel createJalviewModel() + { + return new JalviewModel(); + } + + /** + * Create an instance of {@link JalviewModel.FeatureSettings } + * + */ + public JalviewModel.FeatureSettings createJalviewModelFeatureSettings() + { + return new JalviewModel.FeatureSettings(); + } + + /** + * Create an instance of {@link JalviewModel.PcaViewer } + * + */ + public JalviewModel.PcaViewer createJalviewModelPcaViewer() + { + return new JalviewModel.PcaViewer(); + } + + /** + * Create an instance of {@link JalviewModel.Viewport } + * + */ + public JalviewModel.Viewport createJalviewModelViewport() + { + return new JalviewModel.Viewport(); + } + + /** + * Create an instance of {@link JalviewModel.JSeq } + * + */ + public JalviewModel.JSeq createJalviewModelJSeq() + { + return new JalviewModel.JSeq(); + } + + /** + * Create an instance of {@link JalviewModel.JSeq.RnaViewer } + * + */ + public JalviewModel.JSeq.RnaViewer createJalviewModelJSeqRnaViewer() + { + return new JalviewModel.JSeq.RnaViewer(); + } + + /** + * Create an instance of {@link JalviewModel.JSeq.Pdbids } + * + */ + public JalviewModel.JSeq.Pdbids createJalviewModelJSeqPdbids() + { + return new JalviewModel.JSeq.Pdbids(); + } + + /** + * Create an instance of {@link AnnotationColourScheme } + * + */ + public AnnotationColourScheme createAnnotationColourScheme() + { + return new AnnotationColourScheme(); + } + + /** + * Create an instance of {@link PcaDataType } + * + */ + public PcaDataType createPcaDataType() + { + return new PcaDataType(); + } + + /** + * Create an instance of {@link DoubleVector } + * + */ + public DoubleVector createDoubleVector() + { + return new DoubleVector(); + } + + /** + * Create an instance of {@link DoubleMatrix } + * + */ + public DoubleMatrix createDoubleMatrix() + { + return new DoubleMatrix(); + } + + /** + * Create an instance of {@link Mapping } + * + */ + public Mapping createMapping() + { + return new Mapping(); + } + + /** + * Create an instance of {@link MapListType.MapListFrom } + * + */ + public MapListType.MapListFrom createMapListTypeMapListFrom() + { + return new MapListType.MapListFrom(); + } + + /** + * Create an instance of {@link MapListType.MapListTo } + * + */ + public MapListType.MapListTo createMapListTypeMapListTo() + { + return new MapListType.MapListTo(); + } + + /** + * Create an instance of {@link SequenceType } + * + */ + public SequenceType createSequenceType() + { + return new SequenceType(); + } + + /** + * Create an instance of {@link Sequence.DBRef } + * + */ + public Sequence.DBRef createSequenceDBRef() + { + return new Sequence.DBRef(); + } + + /** + * Create an instance of {@link AlcodonFrame.Alcodon } + * + */ + public AlcodonFrame.Alcodon createAlcodonFrameAlcodon() + { + return new AlcodonFrame.Alcodon(); + } + + /** + * Create an instance of {@link AlcodonFrame.AlcodMap } + * + */ + public AlcodonFrame.AlcodMap createAlcodonFrameAlcodMap() + { + return new AlcodonFrame.AlcodMap(); + } + + /** + * Create an instance of {@link AnnotationElement } + * + */ + public AnnotationElement createAnnotationElement() + { + return new AnnotationElement(); + } + + /** + * Create an instance of {@link Annotation.ThresholdLine } + * + */ + public Annotation.ThresholdLine createAnnotationThresholdLine() + { + return new Annotation.ThresholdLine(); + } + + /** + * Create an instance of {@link Annotation.Property } + * + */ + public Annotation.Property createAnnotationProperty() + { + return new Annotation.Property(); + } + + /** + * Create an instance of {@link SequenceSet.SequenceSetProperties } + * + */ + public SequenceSet.SequenceSetProperties createSequenceSetSequenceSetProperties() + { + return new SequenceSet.SequenceSetProperties(); + } + + /** + * Create an instance of {@link VAMSAS } + * + */ + public VAMSAS createVAMSAS() + { + return new VAMSAS(); + } + + /** + * Create an instance of {@link FeatureMatcher } + * + */ + public FeatureMatcher createFeatureMatcher() + { + return new FeatureMatcher(); + } + + /** + * Create an instance of {@link WebServiceParameterSet } + * + */ + public WebServiceParameterSet createWebServiceParameterSet() + { + return new WebServiceParameterSet(); + } + + /** + * Create an instance of {@link FeatureMatcherSet.CompoundMatcher } + * + */ + public FeatureMatcherSet.CompoundMatcher createFeatureMatcherSetCompoundMatcher() + { + return new FeatureMatcherSet.CompoundMatcher(); + } + + /** + * Create an instance of {@link JalviewUserColours.Colour } + * + */ + public JalviewUserColours.Colour createJalviewUserColoursColour() + { + return new JalviewUserColours.Colour(); + } + + /** + * Create an instance of {@link JalviewUserColours.Filter } + * + */ + public JalviewUserColours.Filter createJalviewUserColoursFilter() + { + return new JalviewUserColours.Filter(); + } + + /** + * Create an instance of {@link Pdbentry.Property } + * + */ + public Pdbentry.Property createPdbentryProperty() + { + return new Pdbentry.Property(); + } + + /** + * Create an instance of {@link Feature.OtherData } + * + */ + public Feature.OtherData createFeatureOtherData() + { + return new Feature.OtherData(); + } + + /** + * Create an instance of {@link JalviewModel.JGroup } + * + */ + public JalviewModel.JGroup createJalviewModelJGroup() + { + return new JalviewModel.JGroup(); + } + + /** + * Create an instance of {@link JalviewModel.UserColours } + * + */ + public JalviewModel.UserColours createJalviewModelUserColours() + { + return new JalviewModel.UserColours(); + } + + /** + * Create an instance of {@link JalviewModel.Tree } + * + */ + public JalviewModel.Tree createJalviewModelTree() + { + return new JalviewModel.Tree(); + } + + /** + * Create an instance of {@link JalviewModel.FeatureSettings.Setting } + * + */ + public JalviewModel.FeatureSettings.Setting createJalviewModelFeatureSettingsSetting() + { + return new JalviewModel.FeatureSettings.Setting(); + } + + /** + * Create an instance of {@link JalviewModel.FeatureSettings.Group } + * + */ + public JalviewModel.FeatureSettings.Group createJalviewModelFeatureSettingsGroup() + { + return new JalviewModel.FeatureSettings.Group(); + } + + /** + * Create an instance of {@link JalviewModel.PcaViewer.SequencePoint } + * + */ + public JalviewModel.PcaViewer.SequencePoint createJalviewModelPcaViewerSequencePoint() + { + return new JalviewModel.PcaViewer.SequencePoint(); + } + + /** + * Create an instance of {@link JalviewModel.PcaViewer.Axis } + * + */ + public JalviewModel.PcaViewer.Axis createJalviewModelPcaViewerAxis() + { + return new JalviewModel.PcaViewer.Axis(); + } + + /** + * Create an instance of {@link JalviewModel.PcaViewer.SeqPointMin } + * + */ + public JalviewModel.PcaViewer.SeqPointMin createJalviewModelPcaViewerSeqPointMin() + { + return new JalviewModel.PcaViewer.SeqPointMin(); + } + + /** + * Create an instance of {@link JalviewModel.PcaViewer.SeqPointMax } + * + */ + public JalviewModel.PcaViewer.SeqPointMax createJalviewModelPcaViewerSeqPointMax() + { + return new JalviewModel.PcaViewer.SeqPointMax(); + } + + /** + * Create an instance of {@link JalviewModel.Viewport.HiddenColumns } + * + */ + public JalviewModel.Viewport.HiddenColumns createJalviewModelViewportHiddenColumns() + { + return new JalviewModel.Viewport.HiddenColumns(); + } + + /** + * Create an instance of {@link JalviewModel.Viewport.CalcIdParam } + * + */ + public JalviewModel.Viewport.CalcIdParam createJalviewModelViewportCalcIdParam() + { + return new JalviewModel.Viewport.CalcIdParam(); + } + + /** + * Create an instance of + * {@link JalviewModel.JSeq.RnaViewer.SecondaryStructure } + * + */ + public JalviewModel.JSeq.RnaViewer.SecondaryStructure createJalviewModelJSeqRnaViewerSecondaryStructure() + { + return new JalviewModel.JSeq.RnaViewer.SecondaryStructure(); + } + + /** + * Create an instance of {@link JalviewModel.JSeq.Pdbids.StructureState } + * + */ + public JalviewModel.JSeq.Pdbids.StructureState createJalviewModelJSeqPdbidsStructureState() + { + return new JalviewModel.JSeq.Pdbids.StructureState(); + } + + /** + * Create an instance of {@link JAXBElement }{@code <}{@link JalviewModel + * }{@code >} + * + * @param value + * Java instance representing xml element's value. + * @return the new instance of {@link JAXBElement + * }{@code <}{@link JalviewModel }{@code >} + */ + @XmlElementDecl(namespace = "www.jalview.org", name = "JalviewModel") + public JAXBElement createJalviewModel(JalviewModel value) + { + return new JAXBElement(_JalviewModel_QNAME, + JalviewModel.class, null, value); + } + + /** + * Create an instance of {@link JAXBElement + * }{@code <}{@link JalviewUserColours }{@code >} + * + * @param value + * Java instance representing xml element's value. + * @return the new instance of {@link JAXBElement + * }{@code <}{@link JalviewUserColours }{@code >} + */ + @XmlElementDecl( + namespace = "www.jalview.org/colours", + name = "JalviewUserColours") + public JAXBElement createJalviewUserColours( + JalviewUserColours value) + { + return new JAXBElement(_JalviewUserColours_QNAME, + JalviewUserColours.class, null, value); + } + + /** + * Create an instance of {@link JAXBElement + * }{@code <}{@link WebServiceParameterSet }{@code >} + * + * @param value + * Java instance representing xml element's value. + * @return the new instance of {@link JAXBElement + * }{@code <}{@link WebServiceParameterSet }{@code >} + */ + @XmlElementDecl( + namespace = "www.jalview.org/xml/wsparamset", + name = "WebServiceParameterSet") + public JAXBElement createWebServiceParameterSet( + WebServiceParameterSet value) + { + return new JAXBElement( + _WebServiceParameterSet_QNAME, WebServiceParameterSet.class, + null, value); + } }