Java class for anonymous complex type. + *
+ * Java class for anonymous complex type. * - *
The following schema fragment specifies the expected content contained within this class. + *
+ * The following schema fragment specifies the expected content contained within + * this class. * *
* <complexType>
@@ -38,12 +39,15 @@ import javax.xml.bind.annotation.XmlType;
* <attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * <attribute name="canonical" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
* </restriction>
* </complexContent>
* </complexType>
* </element>
* </sequence>
* <attribute name="dsseqid" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="biotype" type="{http://www.w3.org/2001/XMLSchema}string" />
* </extension>
* </complexContent>
* </complexType>
@@ -52,206 +56,300 @@ import javax.xml.bind.annotation.XmlType;
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "", propOrder = {
- "dbRef"
-})
+@XmlType(name = "", propOrder = { "dbRef" })
@XmlRootElement(name = "Sequence")
-public class Sequence
- extends SequenceType
+public class Sequence extends SequenceType
{
- @XmlElement(name = "DBRef")
- protected List dbRef;
- @XmlAttribute(name = "dsseqid")
- protected String dsseqid;
+ @XmlElement(name = "DBRef")
+ protected List dbRef;
+
+ @XmlAttribute(name = "dsseqid")
+ protected String dsseqid;
+
+ @XmlAttribute(name = "biotype")
+ protected String biotype;
+
+ /**
+ * Gets the value of the dbRef property.
+ *
+ *
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a set method
+ * for the dbRef property.
+ *
+ *
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * getDBRef().add(newItem);
+ *
+ *
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link Sequence.DBRef }
+ *
+ *
+ */
+ public List getDBRef()
+ {
+ if (dbRef == null)
+ {
+ dbRef = new ArrayList();
+ }
+ return this.dbRef;
+ }
+
+ /**
+ * Gets the value of the dsseqid property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getDsseqid()
+ {
+ return dsseqid;
+ }
+
+ /**
+ * Sets the value of the dsseqid property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setDsseqid(String value)
+ {
+ this.dsseqid = value;
+ }
+
+ /**
+ * Gets the value of the biotype property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getBiotype()
+ {
+ return biotype;
+ }
+
+ /**
+ * Sets the value of the biotype property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setBiotype(String value)
+ {
+ this.biotype = value;
+ }
+
+ /**
+ *
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ *
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/>
+ * </sequence>
+ * <attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * <attribute name="canonical" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "mapping" })
+ public static class DBRef
+ {
+
+ @XmlElement(name = "Mapping")
+ protected Mapping mapping;
+
+ @XmlAttribute(name = "source")
+ protected String source;
+
+ @XmlAttribute(name = "version")
+ protected String version;
+
+ @XmlAttribute(name = "accessionId")
+ protected String accessionId;
+
+ @XmlAttribute(name = "locus")
+ protected Boolean locus;
+
+ @XmlAttribute(name = "canonical")
+ protected Boolean canonical;
/**
- * Gets the value of the dbRef property.
+ * Gets the value of the mapping property.
*
- *
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a set method for the dbRef property.
+ * @return possible object is {@link Mapping }
*
- *
- * For example, to add a new item, do as follows:
- *
- * getDBRef().add(newItem);
- *
+ */
+ public Mapping getMapping()
+ {
+ return mapping;
+ }
+
+ /**
+ * Sets the value of the mapping property.
*
+ * @param value
+ * allowed object is {@link Mapping }
*
- *
- * Objects of the following type(s) are allowed in the list
- * {@link Sequence.DBRef }
+ */
+ public void setMapping(Mapping value)
+ {
+ this.mapping = value;
+ }
+
+ /**
+ * Gets the value of the source property.
*
+ * @return possible object is {@link String }
*
*/
- public List getDBRef() {
- if (dbRef == null) {
- dbRef = new ArrayList();
- }
- return this.dbRef;
+ public String getSource()
+ {
+ return source;
}
/**
- * Gets the value of the dsseqid property.
+ * Sets the value of the source property.
+ *
+ * @param value
+ * allowed object is {@link String }
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getDsseqid() {
- return dsseqid;
+ public void setSource(String value)
+ {
+ this.source = value;
}
/**
- * Sets the value of the dsseqid property.
+ * Gets the value of the version property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getVersion()
+ {
+ return version;
+ }
+
+ /**
+ * Sets the value of the version property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setVersion(String value)
+ {
+ this.version = value;
+ }
+
+ /**
+ * Gets the value of the accessionId property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getAccessionId()
+ {
+ return accessionId;
+ }
+
+ /**
+ * Sets the value of the accessionId property.
*
* @param value
- * allowed object is
- * {@link String }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setDsseqid(String value) {
- this.dsseqid = value;
+ public void setAccessionId(String value)
+ {
+ this.accessionId = value;
}
+ /**
+ * Gets the value of the locus property.
+ *
+ * @return possible object is {@link Boolean }
+ *
+ */
+ public boolean isLocus()
+ {
+ if (locus == null)
+ {
+ return false;
+ }
+ else
+ {
+ return locus;
+ }
+ }
/**
- * Java class for anonymous complex type.
+ * Sets the value of the locus property.
*
- *
The following schema fragment specifies the expected content contained within this class.
+ * @param value
+ * allowed object is {@link Boolean }
*
- *
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/>
- * </sequence>
- * <attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- *
+ */
+ public void setLocus(Boolean value)
+ {
+ this.locus = value;
+ }
+
+ /**
+ * Gets the value of the canonical property.
*
+ * @return possible object is {@link Boolean }
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "mapping"
- })
- public static class DBRef {
-
- @XmlElement(name = "Mapping")
- protected Mapping mapping;
- @XmlAttribute(name = "source")
- protected String source;
- @XmlAttribute(name = "version")
- protected String version;
- @XmlAttribute(name = "accessionId")
- protected String accessionId;
-
- /**
- * Gets the value of the mapping property.
- *
- * @return
- * possible object is
- * {@link Mapping }
- *
- */
- public Mapping getMapping() {
- return mapping;
- }
-
- /**
- * Sets the value of the mapping property.
- *
- * @param value
- * allowed object is
- * {@link Mapping }
- *
- */
- public void setMapping(Mapping value) {
- this.mapping = value;
- }
-
- /**
- * Gets the value of the source property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getSource() {
- return source;
- }
-
- /**
- * Sets the value of the source property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setSource(String value) {
- this.source = value;
- }
-
- /**
- * Gets the value of the version property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getVersion() {
- return version;
- }
-
- /**
- * Sets the value of the version property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setVersion(String value) {
- this.version = value;
- }
-
- /**
- * Gets the value of the accessionId property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getAccessionId() {
- return accessionId;
- }
-
- /**
- * Sets the value of the accessionId property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setAccessionId(String value) {
- this.accessionId = value;
- }
+ public boolean isCanonical()
+ {
+ if (canonical == null)
+ {
+ return false;
+ }
+ else
+ {
+ return canonical;
+ }
+ }
+ /**
+ * Sets the value of the canonical property.
+ *
+ * @param value
+ * allowed object is {@link Boolean }
+ *
+ */
+ public void setCanonical(Boolean value)
+ {
+ this.canonical = value;
}
+ }
+
}