X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FSequence.java;h=6a199a272065426d217a16ad7f45426e1cd04b8f;hb=0de37d1a047209510bab82225109ae2a47931f79;hp=200184531823d56b909d5fce35a2bc358c77f0e6;hpb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/Sequence.java b/src/jalview/xml/binding/jalview/Sequence.java index 2001845..6a199a2 100644 --- a/src/jalview/xml/binding/jalview/Sequence.java +++ b/src/jalview/xml/binding/jalview/Sequence.java @@ -1,10 +1,11 @@ // -// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 -// See https://eclipse-ee4j.github.io/jaxb-ri +// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 +// See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2021.08.30 at 11:05:22 AM BST +// Generated on: 2023.01.31 at 04:07:08 PM GMT // + package jalview.xml.binding.jalview; import java.util.ArrayList; @@ -16,325 +17,332 @@ import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; + /** - * <p>Java class for anonymous complex type. + *
Java class for anonymous complex type. * - * <p>The following schema fragment specifies the expected content - * contained within this class. + *
The following schema fragment specifies the expected content contained within this class. * - * <pre> <complexType> <complexContent> - * <extension - * base="{www.vamsas.ac.uk/jalview/version2}SequenceType"> - * <sequence> <element name="DBRef" maxOccurs="unbounded" - * minOccurs="0"> <complexType> - * <complexContent> <restriction - * base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <sequence> <element - * ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/> - * </sequence> <attribute name="source" - * type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute - * name="version" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="accessionId" - * type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute - * name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" - * /> <attribute name="canonical" - * type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /> - * </restriction> </complexContent> - * </complexType> </element> - * </sequence> <attribute name="dsseqid" - * type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute - * name="biotype" type="{http://www.w3.org/2001/XMLSchema}string" /> - * </extension> </complexContent> - * </complexType> </pre> + *
+ * <complexType> + * <complexContent> + * <extension base="{www.vamsas.ac.uk/jalview/version2}SequenceType"> + * <sequence> + * <element name="DBRef" maxOccurs="unbounded" minOccurs="0"> + * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <sequence> + * <element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/> + * </sequence> + * <attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /> + * <attribute name="canonical" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /> + * </restriction> + * </complexContent> + * </complexType> + * </element> + * </sequence> + * <attribute name="dsseqid" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="biotype" type="{http://www.w3.org/2001/XMLSchema}string" /> + * </extension> + * </complexContent> + * </complexType> + ** * */ @XmlAccessorType(XmlAccessType.FIELD) -@XmlType(name = "", propOrder = { "dbRef" }) +@XmlType(name = "", propOrder = { + "dbRef" +}) @XmlRootElement(name = "Sequence") -public class Sequence extends SequenceType +public class Sequence + extends SequenceType { - @XmlElement(name = "DBRef") - protected List
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a set
method for the dbRef property.
*
- */
- public Mapping getMapping()
- {
- return mapping;
- }
-
- /**
- * Sets the value of the mapping property.
- *
- * @param value
- * allowed object is {@link Mapping }
- *
- */
- public void setMapping(Mapping value)
- {
- this.mapping = value;
- }
-
- /**
- * Gets the value of the source property.
+ *
+ * For example, to add a new item, do as follows: + *
+ * getDBRef().add(newItem); + ** - * @return possible object is {@link String } * - */ - public String getSource() - { - return source; - } - - /** - * Sets the value of the source property. + *
+ * Objects of the following type(s) are allowed in the list
+ * {@link Sequence.DBRef }
*
- * @param value
- * allowed object is {@link String }
*
*/
- public void setSource(String value)
- {
- this.source = value;
+ public List Java class for anonymous complex type.
*
- * @param value
- * allowed object is {@link Boolean }
+ * The following schema fragment specifies the expected content contained within this class.
*
- */
- public void setLocus(Boolean value)
- {
- this.locus = value;
- }
-
- /**
- * Gets the value of the canonical property.
+ *
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/>
+ * </sequence>
+ * <attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * <attribute name="canonical" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
*
- * @return possible object is {@link Boolean }
*
*/
- public boolean isCanonical()
- {
- if (canonical == null)
- {
- return false;
- }
- else
- {
- return canonical;
- }
- }
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = {
+ "mapping"
+ })
+ public static class DBRef {
+
+ @XmlElement(name = "Mapping")
+ protected Mapping mapping;
+ @XmlAttribute(name = "source")
+ protected String source;
+ @XmlAttribute(name = "version")
+ protected String version;
+ @XmlAttribute(name = "accessionId")
+ protected String accessionId;
+ @XmlAttribute(name = "locus")
+ protected Boolean locus;
+ @XmlAttribute(name = "canonical")
+ protected Boolean canonical;
+
+ /**
+ * Gets the value of the mapping property.
+ *
+ * @return
+ * possible object is
+ * {@link Mapping }
+ *
+ */
+ public Mapping getMapping() {
+ return mapping;
+ }
+
+ /**
+ * Sets the value of the mapping property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Mapping }
+ *
+ */
+ public void setMapping(Mapping value) {
+ this.mapping = value;
+ }
+
+ /**
+ * Gets the value of the source property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getSource() {
+ return source;
+ }
+
+ /**
+ * Sets the value of the source property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setSource(String value) {
+ this.source = value;
+ }
+
+ /**
+ * Gets the value of the version property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getVersion() {
+ return version;
+ }
+
+ /**
+ * Sets the value of the version property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setVersion(String value) {
+ this.version = value;
+ }
+
+ /**
+ * Gets the value of the accessionId property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getAccessionId() {
+ return accessionId;
+ }
+
+ /**
+ * Sets the value of the accessionId property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setAccessionId(String value) {
+ this.accessionId = value;
+ }
+
+ /**
+ * Gets the value of the locus property.
+ *
+ * @return
+ * possible object is
+ * {@link Boolean }
+ *
+ */
+ public boolean isLocus() {
+ if (locus == null) {
+ return false;
+ } else {
+ return locus;
+ }
+ }
+
+ /**
+ * Sets the value of the locus property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Boolean }
+ *
+ */
+ public void setLocus(Boolean value) {
+ this.locus = value;
+ }
+
+ /**
+ * Gets the value of the canonical property.
+ *
+ * @return
+ * possible object is
+ * {@link Boolean }
+ *
+ */
+ public boolean isCanonical() {
+ if (canonical == null) {
+ return false;
+ } else {
+ return canonical;
+ }
+ }
+
+ /**
+ * Sets the value of the canonical property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Boolean }
+ *
+ */
+ public void setCanonical(Boolean value) {
+ this.canonical = value;
+ }
- /**
- * Sets the value of the canonical property.
- *
- * @param value
- * allowed object is {@link Boolean }
- *
- */
- public void setCanonical(Boolean value)
- {
- this.canonical = value;
}
- }
-
}