X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FSequence.java;h=98390ef4f26c45c2d9b5f9ff8d97eaaac93e0053;hb=7a48066cfd16ea943eb3dfcc8b2fe353d33ae15a;hp=a5923e1c2a36965b0f521ab11f8432da59e0694b;hpb=cf3e8343ced61a995515cb96e2c638f26dc813b9;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/Sequence.java b/src/jalview/xml/binding/jalview/Sequence.java index a5923e1..98390ef 100644 --- a/src/jalview/xml/binding/jalview/Sequence.java +++ b/src/jalview/xml/binding/jalview/Sequence.java @@ -2,9 +2,10 @@ // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 // See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2023.05.13 at 06:58:41 PM BST +// Generated on: 2023.07.18 at 05:07:54 PM BST // + package jalview.xml.binding.jalview; import java.util.ArrayList; @@ -16,13 +17,11 @@ import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; + /** - *

- * Java class for anonymous complex type. + *

Java class for anonymous complex type. * - *

- * The following schema fragment specifies the expected content contained within - * this class. + *

The following schema fragment specifies the expected content contained within this class. * *

  * <complexType>
@@ -56,300 +55,294 @@ import javax.xml.bind.annotation.XmlType;
  * 
  */
 @XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "", propOrder = { "dbRef" })
+@XmlType(name = "", propOrder = {
+    "dbRef"
+})
 @XmlRootElement(name = "Sequence")
-public class Sequence extends SequenceType
+public class Sequence
+    extends SequenceType
 {
 
-  @XmlElement(name = "DBRef")
-  protected List dbRef;
-
-  @XmlAttribute(name = "dsseqid")
-  protected String dsseqid;
-
-  @XmlAttribute(name = "biotype")
-  protected String biotype;
-
-  /**
-   * Gets the value of the dbRef property.
-   * 
-   * 

- * This accessor method returns a reference to the live list, not a snapshot. - * Therefore any modification you make to the returned list will be present - * inside the JAXB object. This is why there is not a set method - * for the dbRef property. - * - *

- * For example, to add a new item, do as follows: - * - *

-   * getDBRef().add(newItem);
-   * 
- * - * - *

- * Objects of the following type(s) are allowed in the list - * {@link Sequence.DBRef } - * - * - */ - public List getDBRef() - { - if (dbRef == null) - { - dbRef = new ArrayList(); - } - return this.dbRef; - } - - /** - * Gets the value of the dsseqid property. - * - * @return possible object is {@link String } - * - */ - public String getDsseqid() - { - return dsseqid; - } - - /** - * Sets the value of the dsseqid property. - * - * @param value - * allowed object is {@link String } - * - */ - public void setDsseqid(String value) - { - this.dsseqid = value; - } - - /** - * Gets the value of the biotype property. - * - * @return possible object is {@link String } - * - */ - public String getBiotype() - { - return biotype; - } - - /** - * Sets the value of the biotype property. - * - * @param value - * allowed object is {@link String } - * - */ - public void setBiotype(String value) - { - this.biotype = value; - } - - /** - *

- * Java class for anonymous complex type. - * - *

- * The following schema fragment specifies the expected content contained - * within this class. - * - *

-   * <complexType>
-   *   <complexContent>
-   *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
-   *       <sequence>
-   *         <element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/>
-   *       </sequence>
-   *       <attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" />
-   *       <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
-   *       <attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" />
-   *       <attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
-   *       <attribute name="canonical" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
-   *     </restriction>
-   *   </complexContent>
-   * </complexType>
-   * 
- * - * - */ - @XmlAccessorType(XmlAccessType.FIELD) - @XmlType(name = "", propOrder = { "mapping" }) - public static class DBRef - { - - @XmlElement(name = "Mapping") - protected Mapping mapping; - - @XmlAttribute(name = "source") - protected String source; - - @XmlAttribute(name = "version") - protected String version; - - @XmlAttribute(name = "accessionId") - protected String accessionId; - - @XmlAttribute(name = "locus") - protected Boolean locus; - - @XmlAttribute(name = "canonical") - protected Boolean canonical; + @XmlElement(name = "DBRef") + protected List dbRef; + @XmlAttribute(name = "dsseqid") + protected String dsseqid; + @XmlAttribute(name = "biotype") + protected String biotype; /** - * Gets the value of the mapping property. + * Gets the value of the dbRef property. * - * @return possible object is {@link Mapping } + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the dbRef property. * - */ - public Mapping getMapping() - { - return mapping; - } - - /** - * Sets the value of the mapping property. - * - * @param value - * allowed object is {@link Mapping } - * - */ - public void setMapping(Mapping value) - { - this.mapping = value; - } - - /** - * Gets the value of the source property. + *

+ * For example, to add a new item, do as follows: + *

+     *    getDBRef().add(newItem);
+     * 
* - * @return possible object is {@link String } * - */ - public String getSource() - { - return source; - } - - /** - * Sets the value of the source property. + *

+ * Objects of the following type(s) are allowed in the list + * {@link Sequence.DBRef } * - * @param value - * allowed object is {@link String } * */ - public void setSource(String value) - { - this.source = value; + public List getDBRef() { + if (dbRef == null) { + dbRef = new ArrayList(); + } + return this.dbRef; } /** - * Gets the value of the version property. - * - * @return possible object is {@link String } + * Gets the value of the dsseqid property. * + * @return + * possible object is + * {@link String } + * */ - public String getVersion() - { - return version; + public String getDsseqid() { + return dsseqid; } /** - * Sets the value of the version property. + * Sets the value of the dsseqid property. * * @param value - * allowed object is {@link String } - * + * allowed object is + * {@link String } + * */ - public void setVersion(String value) - { - this.version = value; + public void setDsseqid(String value) { + this.dsseqid = value; } /** - * Gets the value of the accessionId property. - * - * @return possible object is {@link String } + * Gets the value of the biotype property. * + * @return + * possible object is + * {@link String } + * */ - public String getAccessionId() - { - return accessionId; + public String getBiotype() { + return biotype; } /** - * Sets the value of the accessionId property. + * Sets the value of the biotype property. * * @param value - * allowed object is {@link String } - * + * allowed object is + * {@link String } + * */ - public void setAccessionId(String value) - { - this.accessionId = value; + public void setBiotype(String value) { + this.biotype = value; } - /** - * Gets the value of the locus property. - * - * @return possible object is {@link Boolean } - * - */ - public boolean isLocus() - { - if (locus == null) - { - return false; - } - else - { - return locus; - } - } /** - * Sets the value of the locus property. + *

Java class for anonymous complex type. * - * @param value - * allowed object is {@link Boolean } + *

The following schema fragment specifies the expected content contained within this class. * - */ - public void setLocus(Boolean value) - { - this.locus = value; - } - - /** - * Gets the value of the canonical property. + *

+     * <complexType>
+     *   <complexContent>
+     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     *       <sequence>
+     *         <element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/>
+     *       </sequence>
+     *       <attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       <attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       <attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+     *       <attribute name="canonical" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+     *     </restriction>
+     *   </complexContent>
+     * </complexType>
+     * 
* - * @return possible object is {@link Boolean } * */ - public boolean isCanonical() - { - if (canonical == null) - { - return false; - } - else - { - return canonical; - } - } + @XmlAccessorType(XmlAccessType.FIELD) + @XmlType(name = "", propOrder = { + "mapping" + }) + public static class DBRef { + + @XmlElement(name = "Mapping") + protected Mapping mapping; + @XmlAttribute(name = "source") + protected String source; + @XmlAttribute(name = "version") + protected String version; + @XmlAttribute(name = "accessionId") + protected String accessionId; + @XmlAttribute(name = "locus") + protected Boolean locus; + @XmlAttribute(name = "canonical") + protected Boolean canonical; + + /** + * Gets the value of the mapping property. + * + * @return + * possible object is + * {@link Mapping } + * + */ + public Mapping getMapping() { + return mapping; + } + + /** + * Sets the value of the mapping property. + * + * @param value + * allowed object is + * {@link Mapping } + * + */ + public void setMapping(Mapping value) { + this.mapping = value; + } + + /** + * Gets the value of the source property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getSource() { + return source; + } + + /** + * Sets the value of the source property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setSource(String value) { + this.source = value; + } + + /** + * Gets the value of the version property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getVersion() { + return version; + } + + /** + * Sets the value of the version property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setVersion(String value) { + this.version = value; + } + + /** + * Gets the value of the accessionId property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getAccessionId() { + return accessionId; + } + + /** + * Sets the value of the accessionId property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setAccessionId(String value) { + this.accessionId = value; + } + + /** + * Gets the value of the locus property. + * + * @return + * possible object is + * {@link Boolean } + * + */ + public boolean isLocus() { + if (locus == null) { + return false; + } else { + return locus; + } + } + + /** + * Sets the value of the locus property. + * + * @param value + * allowed object is + * {@link Boolean } + * + */ + public void setLocus(Boolean value) { + this.locus = value; + } + + /** + * Gets the value of the canonical property. + * + * @return + * possible object is + * {@link Boolean } + * + */ + public boolean isCanonical() { + if (canonical == null) { + return false; + } else { + return canonical; + } + } + + /** + * Sets the value of the canonical property. + * + * @param value + * allowed object is + * {@link Boolean } + * + */ + public void setCanonical(Boolean value) { + this.canonical = value; + } - /** - * Sets the value of the canonical property. - * - * @param value - * allowed object is {@link Boolean } - * - */ - public void setCanonical(Boolean value) - { - this.canonical = value; } - } - }