X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FSequenceSet.java;h=751f6cab1f427ae6c9badc741d9c07bde8a64c12;hb=051cab343aed415a342a787e10ebd075f05243f6;hp=7bd7c1e15600ab3861e6d3065063ae88bdc02065;hpb=4d64932654de3f6ffe07db11d18f2d21f558c6e6;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/SequenceSet.java b/src/jalview/xml/binding/jalview/SequenceSet.java index 7bd7c1e..751f6ca 100644 --- a/src/jalview/xml/binding/jalview/SequenceSet.java +++ b/src/jalview/xml/binding/jalview/SequenceSet.java @@ -1,8 +1,8 @@ // -// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 -// See http://java.sun.com/xml/jaxb +// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 +// See https://eclipse-ee4j.github.io/jaxb-ri // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2018.09.28 at 12:18:54 PM BST +// Generated on: 2023.11.01 at 07:03:09 PM GMT // @@ -19,35 +19,36 @@ import javax.xml.bind.annotation.XmlType; /** - *
Java class for anonymous complex type. + * <p>Java class for anonymous complex type. * - *
The following schema fragment specifies the expected content contained within this class. + * <p>The following schema fragment specifies the expected content contained within this class. * - *
- * <complexType> - * <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <sequence> - * <element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/> - * <element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/> - * <element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0"> - * <complexType> - * <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /> - * </restriction> - * </complexContent> - * </complexType> - * </element> - * <element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/> - * </sequence> - * <attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" /> - * </restriction> - * </complexContent> - * </complexType> - *+ * <pre> + * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <sequence> + * <element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/> + * <element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/> + * <element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0"> + * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /> + * </restriction> + * </complexContent> + * </complexType> + * </element> + * <element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/> + * <element name="Matrix" type="{www.vamsas.ac.uk/jalview/version2}MatrixType" maxOccurs="unbounded" minOccurs="0"/> + * </sequence> + * <attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" /> + * </restriction> + * </complexContent> + * </complexType> + * </pre> * * */ @@ -56,7 +57,8 @@ import javax.xml.bind.annotation.XmlType; "sequence", "annotation", "sequenceSetProperties", - "alcodonFrame" + "alcodonFrame", + "matrix" }) @XmlRootElement(name = "SequenceSet") public class SequenceSet { @@ -68,6 +70,8 @@ public class SequenceSet { protected List
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a set
method for the sequence property.
+ * This is why there is not a <CODE>set</CODE> method for the sequence property.
*
- *
+ * <p> * For example, to add a new item, do as follows: - *
+ * <pre> * getSequence().add(newItem); - *+ * </pre> * * - *
+ * <p> * Objects of the following type(s) are allowed in the list * {@link Sequence } * @@ -105,20 +109,20 @@ public class SequenceSet { /** * Gets the value of the annotation property. * - *
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a set
method for the annotation property.
+ * This is why there is not a <CODE>set</CODE> method for the annotation property.
*
- *
+ * <p> * For example, to add a new item, do as follows: - *
+ * <pre> * getAnnotation().add(newItem); - *+ * </pre> * * - *
+ * <p> * Objects of the following type(s) are allowed in the list * {@link Annotation } * @@ -134,20 +138,20 @@ public class SequenceSet { /** * Gets the value of the sequenceSetProperties property. * - *
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a set
method for the sequenceSetProperties property.
+ * This is why there is not a <CODE>set</CODE> method for the sequenceSetProperties property.
*
- *
+ * <p> * For example, to add a new item, do as follows: - *
+ * <pre> * getSequenceSetProperties().add(newItem); - *+ * </pre> * * - *
+ * <p> * Objects of the following type(s) are allowed in the list * {@link SequenceSet.SequenceSetProperties } * @@ -163,20 +167,20 @@ public class SequenceSet { /** * Gets the value of the alcodonFrame property. * - *
+ * <p>
* This accessor method returns a reference to the live list,
* not a snapshot. Therefore any modification you make to the
* returned list will be present inside the JAXB object.
- * This is why there is not a set
method for the alcodonFrame property.
+ * This is why there is not a <CODE>set</CODE> method for the alcodonFrame property.
*
- *
+ * <p> * For example, to add a new item, do as follows: - *
+ * <pre> * getAlcodonFrame().add(newItem); - *+ * </pre> * * - *
+ * <p>
* Objects of the following type(s) are allowed in the list
* {@link AlcodonFrame }
*
@@ -190,6 +194,35 @@ public class SequenceSet {
}
/**
+ * Gets the value of the matrix property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list,
+ * not a snapshot. Therefore any modification you make to the
+ * returned list will be present inside the JAXB object.
+ * This is why there is not a <CODE>set</CODE> method for the matrix property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ * <pre>
+ * getMatrix().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link MatrixType }
+ *
+ *
+ */
+ public List Java class for anonymous complex type.
- *
- * The following schema fragment specifies the expected content contained within this class.
- *
- *
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- *
+ * <p>Java class for anonymous complex type.
+ *
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
*
*
*/