X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FSequenceSet.java;h=ed2c120ed33c57e853649293e7c670633eb01af7;hb=3659ecfe7bb17dd25a0a6b5c94a7d9dab4525136;hp=d6464b3551cecfd84c563aa4273cc1a6f6b3c5ba;hpb=dbdd2bd3493e0aef8aa3c0fe054c6bceedc31316;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/SequenceSet.java b/src/jalview/xml/binding/jalview/SequenceSet.java index d6464b3..ed2c120 100644 --- a/src/jalview/xml/binding/jalview/SequenceSet.java +++ b/src/jalview/xml/binding/jalview/SequenceSet.java @@ -1,10 +1,11 @@ // -// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 -// See https://eclipse-ee4j.github.io/jaxb-ri +// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 +// See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2021.08.30 at 11:05:22 AM BST +// Generated on: 2023.01.31 at 04:07:08 PM GMT // + package jalview.xml.binding.jalview; import java.util.ArrayList; @@ -16,287 +17,302 @@ import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; + /** - * <p>Java class for anonymous complex type. + *

Java class for anonymous complex type. * - * <p>The following schema fragment specifies the expected content - * contained within this class. + *

The following schema fragment specifies the expected content contained within this class. * - * <pre> &lt;complexType&gt; &lt;complexContent&gt; - * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; - * &lt;sequence&gt; &lt;element - * ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" - * minOccurs="0"/&gt; &lt;element - * ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" - * minOccurs="0"/&gt; &lt;element name="sequenceSetProperties" - * maxOccurs="unbounded" minOccurs="0"&gt; &lt;complexType&gt; - * &lt;complexContent&gt; &lt;restriction - * base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; &lt;attribute - * name="key" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;attribute name="value" - * type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;/restriction&gt; &lt;/complexContent&gt; - * &lt;/complexType&gt; &lt;/element&gt; &lt;element - * ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" - * minOccurs="0"/&gt; &lt;/sequence&gt; &lt;attribute - * name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" - * /&gt; &lt;attribute name="datasetId" - * type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;/restriction&gt; &lt;/complexContent&gt; - * &lt;/complexType&gt; </pre> + * 

+ * <complexType>
+ *   <complexContent>
+ *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       <sequence>
+ *         <element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/>
+ *         <element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/>
+ *         <element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0">
+ *           <complexType>
+ *             <complexContent>
+ *               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *                 <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *                 <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *               </restriction>
+ *             </complexContent>
+ *           </complexType>
+ *         </element>
+ *         <element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/>
+ *       </sequence>
+ *       <attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *       <attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *     </restriction>
+ *   </complexContent>
+ * </complexType>
+ *
* * */ @XmlAccessorType(XmlAccessType.FIELD) -@XmlType( - name = "", - propOrder = - { "sequence", "annotation", "sequenceSetProperties", "alcodonFrame" }) +@XmlType(name = "", propOrder = { + "sequence", + "annotation", + "sequenceSetProperties", + "alcodonFrame" +}) @XmlRootElement(name = "SequenceSet") -public class SequenceSet -{ - - @XmlElement(name = "Sequence") - protected List sequence; - - @XmlElement(name = "Annotation") - protected List annotation; +public class SequenceSet { - protected List sequenceSetProperties; + @XmlElement(name = "Sequence") + protected List sequence; + @XmlElement(name = "Annotation") + protected List annotation; + protected List sequenceSetProperties; + @XmlElement(name = "AlcodonFrame") + protected List alcodonFrame; + @XmlAttribute(name = "gapChar", required = true) + protected String gapChar; + @XmlAttribute(name = "datasetId") + protected String datasetId; - @XmlElement(name = "AlcodonFrame") - protected List alcodonFrame; - - @XmlAttribute(name = "gapChar", required = true) - protected String gapChar; - - @XmlAttribute(name = "datasetId") - protected String datasetId; - - /** - * Gets the value of the sequence property. - * - * <p> This accessor method returns a reference to the live list, not a - * snapshot. Therefore any modification you make to the returned list will be - * present inside the JAXB object. This is why there is not a - * <CODE>set</CODE> method for the sequence property. - * - * <p> For example, to add a new item, do as follows: <pre> - * getSequence().add(newItem); </pre> - * - * - * <p> Objects of the following type(s) are allowed in the list - * {@link Sequence } - * - * - */ - public List getSequence() - { - if (sequence == null) - { - sequence = new ArrayList(); + /** + * Gets the value of the sequence property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the sequence property. + * + *

+ * For example, to add a new item, do as follows: + * 

+     *    getSequence().add(newItem);
+     *
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link Sequence } + * + * + */ + public List getSequence() { + if (sequence == null) { + sequence = new ArrayList(); + } + return this.sequence; } - return this.sequence; - } - /** - * Gets the value of the annotation property. - * - * <p> This accessor method returns a reference to the live list, not a - * snapshot. Therefore any modification you make to the returned list will be - * present inside the JAXB object. This is why there is not a - * <CODE>set</CODE> method for the annotation property. - * - * <p> For example, to add a new item, do as follows: <pre> - * getAnnotation().add(newItem); </pre> - * - * - * <p> Objects of the following type(s) are allowed in the list - * {@link Annotation } - * - * - */ - public List getAnnotation() - { - if (annotation == null) - { - annotation = new ArrayList(); + /** + * Gets the value of the annotation property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the annotation property. + * + *

+ * For example, to add a new item, do as follows: + * 

+     *    getAnnotation().add(newItem);
+     *
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link Annotation } + * + * + */ + public List getAnnotation() { + if (annotation == null) { + annotation = new ArrayList(); + } + return this.annotation; } - return this.annotation; - } - /** - * Gets the value of the sequenceSetProperties property. - * - * <p> This accessor method returns a reference to the live list, not a - * snapshot. Therefore any modification you make to the returned list will be - * present inside the JAXB object. This is why there is not a - * <CODE>set</CODE> method for the sequenceSetProperties property. - * - * <p> For example, to add a new item, do as follows: <pre> - * getSequenceSetProperties().add(newItem); </pre> - * - * - * <p> Objects of the following type(s) are allowed in the list - * {@link SequenceSet.SequenceSetProperties } - * - * - */ - public List getSequenceSetProperties() - { - if (sequenceSetProperties == null) - { - sequenceSetProperties = new ArrayList(); + /** + * Gets the value of the sequenceSetProperties property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the sequenceSetProperties property. + * + *

+ * For example, to add a new item, do as follows: + * 

+     *    getSequenceSetProperties().add(newItem);
+     *
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link SequenceSet.SequenceSetProperties } + * + * + */ + public List getSequenceSetProperties() { + if (sequenceSetProperties == null) { + sequenceSetProperties = new ArrayList(); + } + return this.sequenceSetProperties; } - return this.sequenceSetProperties; - } - /** - * Gets the value of the alcodonFrame property. - * - * <p> This accessor method returns a reference to the live list, not a - * snapshot. Therefore any modification you make to the returned list will be - * present inside the JAXB object. This is why there is not a - * <CODE>set</CODE> method for the alcodonFrame property. - * - * <p> For example, to add a new item, do as follows: <pre> - * getAlcodonFrame().add(newItem); </pre> - * - * - * <p> Objects of the following type(s) are allowed in the list - * {@link AlcodonFrame } - * - * - */ - public List getAlcodonFrame() - { - if (alcodonFrame == null) - { - alcodonFrame = new ArrayList(); + /** + * Gets the value of the alcodonFrame property. + * + *

+ * This accessor method returns a reference to the live list, + * not a snapshot. Therefore any modification you make to the + * returned list will be present inside the JAXB object. + * This is why there is not a set method for the alcodonFrame property. + * + *

+ * For example, to add a new item, do as follows: + * 

+     *    getAlcodonFrame().add(newItem);
+     *
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link AlcodonFrame } + * + * + */ + public List getAlcodonFrame() { + if (alcodonFrame == null) { + alcodonFrame = new ArrayList(); + } + return this.alcodonFrame; } - return this.alcodonFrame; - } - - /** - * Gets the value of the gapChar property. - * - * @return possible object is {@link String } - * - */ - public String getGapChar() - { - return gapChar; - } - - /** - * Sets the value of the gapChar property. - * - * @param value - * allowed object is {@link String } - * - */ - public void setGapChar(String value) - { - this.gapChar = value; - } - - /** - * Gets the value of the datasetId property. - * - * @return possible object is {@link String } - * - */ - public String getDatasetId() - { - return datasetId; - } - - /** - * Sets the value of the datasetId property. - * - * @param value - * allowed object is {@link String } - * - */ - public void setDatasetId(String value) - { - this.datasetId = value; - } - - /** - * <p>Java class for anonymous complex type. - * - * <p>The following schema fragment specifies the expected content - * contained within this class. - * - * <pre> &lt;complexType&gt; &lt;complexContent&gt; - * &lt;restriction - * base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; &lt;attribute - * name="key" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;attribute name="value" - * type="{http://www.w3.org/2001/XMLSchema}string" /&gt; - * &lt;/restriction&gt; &lt;/complexContent&gt; - * &lt;/complexType&gt; </pre> - * - * - */ - @XmlAccessorType(XmlAccessType.FIELD) - @XmlType(name = "") - public static class SequenceSetProperties - { - - @XmlAttribute(name = "key") - protected String key; - - @XmlAttribute(name = "value") - protected String value; /** - * Gets the value of the key property. - * - * @return possible object is {@link String } + * Gets the value of the gapChar property. * + * @return + * possible object is + * {@link String } + * */ - public String getKey() - { - return key; + public String getGapChar() { + return gapChar; } /** - * Sets the value of the key property. + * Sets the value of the gapChar property. * * @param value - * allowed object is {@link String } - * + * allowed object is + * {@link String } + * */ - public void setKey(String value) - { - this.key = value; + public void setGapChar(String value) { + this.gapChar = value; } /** - * Gets the value of the value property. - * - * @return possible object is {@link String } + * Gets the value of the datasetId property. * + * @return + * possible object is + * {@link String } + * */ - public String getValue() - { - return value; + public String getDatasetId() { + return datasetId; } /** - * Sets the value of the value property. + * Sets the value of the datasetId property. * * @param value - * allowed object is {@link String } - * + * allowed object is + * {@link String } + * */ - public void setValue(String value) - { - this.value = value; + public void setDatasetId(String value) { + this.datasetId = value; } - } + + /** + *

Java class for anonymous complex type. + * + *

The following schema fragment specifies the expected content contained within this class. + * + * 

+     * <complexType>
+     *   <complexContent>
+     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     *       <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *     </restriction>
+     *   </complexContent>
+     * </complexType>
+     *
+ * + * + */ + @XmlAccessorType(XmlAccessType.FIELD) + @XmlType(name = "") + public static class SequenceSetProperties { + + @XmlAttribute(name = "key") + protected String key; + @XmlAttribute(name = "value") + protected String value; + + /** + * Gets the value of the key property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getKey() { + return key; + } + + /** + * Sets the value of the key property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setKey(String value) { + this.key = value; + } + + /** + * Gets the value of the value property. + * + * @return + * possible object is + * {@link String } + * + */ + public String getValue() { + return value; + } + + /** + * Sets the value of the value property. + * + * @param value + * allowed object is + * {@link String } + * + */ + public void setValue(String value) { + this.value = value; + } + + } }