X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FSequenceSet.java;h=f08b2256da5fa3a6ce6efeee19dedf5cb3ec4477;hb=50fbfb08041ca4ac18e92b82e44446fa72a1f311;hp=0c435d06dcbd6ef3955db9910c8961c042d4eb52;hpb=7b32d373b60d0af55481cfd6d377b2cc1ec035c0;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/SequenceSet.java b/src/jalview/xml/binding/jalview/SequenceSet.java index 0c435d0..f08b225 100644 --- a/src/jalview/xml/binding/jalview/SequenceSet.java +++ b/src/jalview/xml/binding/jalview/SequenceSet.java @@ -1,11 +1,10 @@ // -// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 -// See https://eclipse-ee4j.github.io/jaxb-ri +// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 +// See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2022.02.07 at 04:44:47 PM GMT +// Generated on: 2023.05.13 at 06:58:41 PM BST // - package jalview.xml.binding.jalview; import java.util.ArrayList; @@ -17,302 +16,319 @@ import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; - /** - * <p>Java class for anonymous complex type. + *
+ * Java class for anonymous complex type. * - * <p>The following schema fragment specifies the expected content contained within this class. + *
+ * The following schema fragment specifies the expected content contained within + * this class. * - * <pre> - * <complexType> - * <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <sequence> - * <element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/> - * <element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/> - * <element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0"> - * <complexType> - * <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /> - * </restriction> - * </complexContent> - * </complexType> - * </element> - * <element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/> - * </sequence> - * <attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" /> - * </restriction> - * </complexContent> - * </complexType> - * </pre> + *
+ * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <sequence> + * <element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/> + * <element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/> + * <element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0"> + * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /> + * </restriction> + * </complexContent> + * </complexType> + * </element> + * <element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/> + * </sequence> + * <attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" /> + * </restriction> + * </complexContent> + * </complexType> + ** * */ @XmlAccessorType(XmlAccessType.FIELD) -@XmlType(name = "", propOrder = { - "sequence", - "annotation", - "sequenceSetProperties", - "alcodonFrame" -}) +@XmlType( + name = "", + propOrder = + { "sequence", "annotation", "sequenceSetProperties", "alcodonFrame" }) @XmlRootElement(name = "SequenceSet") -public class SequenceSet { +public class SequenceSet +{ - @XmlElement(name = "Sequence") - protected List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a set
method
+ * for the sequence property.
+ *
+ *
+ * For example, to add a new item, do as follows: + * + *
+ * getSequence().add(newItem); + *+ * + * + *
+ * Objects of the following type(s) are allowed in the list {@link Sequence }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list {@link Annotation
+ * }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link SequenceSet.SequenceSetProperties }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link AlcodonFrame }
+ *
+ *
+ */
+ public List
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * set
method
+ * for the annotation property.
+ *
+ *
+ * getAnnotation().add(newItem);
+ *
+ *
+ *
+ * set
method
+ * for the sequenceSetProperties property.
+ *
+ *
+ * getSequenceSetProperties().add(newItem);
+ *
+ *
+ *
+ * set
method
+ * for the alcodonFrame property.
+ *
+ *
+ * getAlcodonFrame().add(newItem);
+ *
+ *
+ *
+ *
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class SequenceSetProperties
+ {
+
+ @XmlAttribute(name = "key")
+ protected String key;
+
+ @XmlAttribute(name = "value")
+ protected String value;
/**
- * Gets the value of the gapChar property.
+ * Gets the value of the key property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getGapChar() {
- return gapChar;
+ public String getKey()
+ {
+ return key;
}
/**
- * Sets the value of the gapChar property.
+ * Sets the value of the key property.
*
* @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setGapChar(String value) {
- this.gapChar = value;
- }
-
- /**
- * Gets the value of the datasetId property.
+ * allowed object is {@link String }
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getDatasetId() {
- return datasetId;
+ public void setKey(String value)
+ {
+ this.key = value;
}
/**
- * Sets the value of the datasetId property.
+ * Gets the value of the value property.
+ *
+ * @return possible object is {@link String }
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setDatasetId(String value) {
- this.datasetId = value;
+ public String getValue()
+ {
+ return value;
}
-
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * Sets the value of the value property.
*
+ * @param value
+ * allowed object is {@link String }
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class SequenceSetProperties {
-
- @XmlAttribute(name = "key")
- protected String key;
- @XmlAttribute(name = "value")
- protected String value;
-
- /**
- * Gets the value of the key property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getKey() {
- return key;
- }
-
- /**
- * Sets the value of the key property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setKey(String value) {
- this.key = value;
- }
-
- /**
- * Gets the value of the value property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getValue() {
- return value;
- }
-
- /**
- * Sets the value of the value property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setValue(String value) {
- this.value = value;
- }
-
+ public void setValue(String value)
+ {
+ this.value = value;
}
+ }
+
}