X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FSequenceSet.java;h=f08b2256da5fa3a6ce6efeee19dedf5cb3ec4477;hb=50fbfb08041ca4ac18e92b82e44446fa72a1f311;hp=ed2c120ed33c57e853649293e7c670633eb01af7;hpb=3659ecfe7bb17dd25a0a6b5c94a7d9dab4525136;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/SequenceSet.java b/src/jalview/xml/binding/jalview/SequenceSet.java index ed2c120..f08b225 100644 --- a/src/jalview/xml/binding/jalview/SequenceSet.java +++ b/src/jalview/xml/binding/jalview/SequenceSet.java @@ -2,10 +2,9 @@ // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 // See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2023.01.31 at 04:07:08 PM GMT +// Generated on: 2023.05.13 at 06:58:41 PM BST // - package jalview.xml.binding.jalview; import java.util.ArrayList; @@ -17,11 +16,13 @@ import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; - /** - *

Java class for anonymous complex type. + *

+ * Java class for anonymous complex type. * - *

The following schema fragment specifies the expected content contained within this class. + *

+ * The following schema fragment specifies the expected content contained within + * this class. * *

  * <complexType>
@@ -52,267 +53,282 @@ import javax.xml.bind.annotation.XmlType;
  * 
  */
 @XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "", propOrder = {
-    "sequence",
-    "annotation",
-    "sequenceSetProperties",
-    "alcodonFrame"
-})
+@XmlType(
+  name = "",
+  propOrder =
+  { "sequence", "annotation", "sequenceSetProperties", "alcodonFrame" })
 @XmlRootElement(name = "SequenceSet")
-public class SequenceSet {
+public class SequenceSet
+{
 
-    @XmlElement(name = "Sequence")
-    protected List sequence;
-    @XmlElement(name = "Annotation")
-    protected List annotation;
-    protected List sequenceSetProperties;
-    @XmlElement(name = "AlcodonFrame")
-    protected List alcodonFrame;
-    @XmlAttribute(name = "gapChar", required = true)
-    protected String gapChar;
-    @XmlAttribute(name = "datasetId")
-    protected String datasetId;
+  @XmlElement(name = "Sequence")
+  protected List sequence;
 
-    /**
-     * Gets the value of the sequence property.
-     * 
-     * 

- * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a set method for the sequence property. - * - *

- * For example, to add a new item, do as follows: - *

-     *    getSequence().add(newItem);
-     * 
- * - * - *

- * Objects of the following type(s) are allowed in the list - * {@link Sequence } - * - * - */ - public List getSequence() { - if (sequence == null) { - sequence = new ArrayList(); - } - return this.sequence; + @XmlElement(name = "Annotation") + protected List annotation; + + protected List sequenceSetProperties; + + @XmlElement(name = "AlcodonFrame") + protected List alcodonFrame; + + @XmlAttribute(name = "gapChar", required = true) + protected String gapChar; + + @XmlAttribute(name = "datasetId") + protected String datasetId; + + /** + * Gets the value of the sequence property. + * + *

+ * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a set method + * for the sequence property. + * + *

+ * For example, to add a new item, do as follows: + * + *

+   * getSequence().add(newItem);
+   * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list {@link Sequence } + * + * + */ + public List getSequence() + { + if (sequence == null) + { + sequence = new ArrayList(); } + return this.sequence; + } - /** - * Gets the value of the annotation property. - * - *

- * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a set method for the annotation property. - * - *

- * For example, to add a new item, do as follows: - *

-     *    getAnnotation().add(newItem);
-     * 
- * - * - *

- * Objects of the following type(s) are allowed in the list - * {@link Annotation } - * - * - */ - public List getAnnotation() { - if (annotation == null) { - annotation = new ArrayList(); - } - return this.annotation; + /** + * Gets the value of the annotation property. + * + *

+ * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a set method + * for the annotation property. + * + *

+ * For example, to add a new item, do as follows: + * + *

+   * getAnnotation().add(newItem);
+   * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list {@link Annotation + * } + * + * + */ + public List getAnnotation() + { + if (annotation == null) + { + annotation = new ArrayList(); } + return this.annotation; + } - /** - * Gets the value of the sequenceSetProperties property. - * - *

- * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a set method for the sequenceSetProperties property. - * - *

- * For example, to add a new item, do as follows: - *

-     *    getSequenceSetProperties().add(newItem);
-     * 
- * - * - *

- * Objects of the following type(s) are allowed in the list - * {@link SequenceSet.SequenceSetProperties } - * - * - */ - public List getSequenceSetProperties() { - if (sequenceSetProperties == null) { - sequenceSetProperties = new ArrayList(); - } - return this.sequenceSetProperties; + /** + * Gets the value of the sequenceSetProperties property. + * + *

+ * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a set method + * for the sequenceSetProperties property. + * + *

+ * For example, to add a new item, do as follows: + * + *

+   * getSequenceSetProperties().add(newItem);
+   * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link SequenceSet.SequenceSetProperties } + * + * + */ + public List getSequenceSetProperties() + { + if (sequenceSetProperties == null) + { + sequenceSetProperties = new ArrayList(); } + return this.sequenceSetProperties; + } - /** - * Gets the value of the alcodonFrame property. - * - *

- * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a set method for the alcodonFrame property. - * - *

- * For example, to add a new item, do as follows: - *

-     *    getAlcodonFrame().add(newItem);
-     * 
- * - * - *

- * Objects of the following type(s) are allowed in the list - * {@link AlcodonFrame } - * - * - */ - public List getAlcodonFrame() { - if (alcodonFrame == null) { - alcodonFrame = new ArrayList(); - } - return this.alcodonFrame; + /** + * Gets the value of the alcodonFrame property. + * + *

+ * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a set method + * for the alcodonFrame property. + * + *

+ * For example, to add a new item, do as follows: + * + *

+   * getAlcodonFrame().add(newItem);
+   * 
+ * + * + *

+ * Objects of the following type(s) are allowed in the list + * {@link AlcodonFrame } + * + * + */ + public List getAlcodonFrame() + { + if (alcodonFrame == null) + { + alcodonFrame = new ArrayList(); } + return this.alcodonFrame; + } + + /** + * Gets the value of the gapChar property. + * + * @return possible object is {@link String } + * + */ + public String getGapChar() + { + return gapChar; + } + + /** + * Sets the value of the gapChar property. + * + * @param value + * allowed object is {@link String } + * + */ + public void setGapChar(String value) + { + this.gapChar = value; + } + + /** + * Gets the value of the datasetId property. + * + * @return possible object is {@link String } + * + */ + public String getDatasetId() + { + return datasetId; + } + + /** + * Sets the value of the datasetId property. + * + * @param value + * allowed object is {@link String } + * + */ + public void setDatasetId(String value) + { + this.datasetId = value; + } + + /** + *

+ * Java class for anonymous complex type. + * + *

+ * The following schema fragment specifies the expected content contained + * within this class. + * + *

+   * <complexType>
+   *   <complexContent>
+   *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+   *       <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
+   *       <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+   *     </restriction>
+   *   </complexContent>
+   * </complexType>
+   * 
+ * + * + */ + @XmlAccessorType(XmlAccessType.FIELD) + @XmlType(name = "") + public static class SequenceSetProperties + { + + @XmlAttribute(name = "key") + protected String key; + + @XmlAttribute(name = "value") + protected String value; /** - * Gets the value of the gapChar property. + * Gets the value of the key property. + * + * @return possible object is {@link String } * - * @return - * possible object is - * {@link String } - * */ - public String getGapChar() { - return gapChar; + public String getKey() + { + return key; } /** - * Sets the value of the gapChar property. + * Sets the value of the key property. * * @param value - * allowed object is - * {@link String } - * - */ - public void setGapChar(String value) { - this.gapChar = value; - } - - /** - * Gets the value of the datasetId property. + * allowed object is {@link String } * - * @return - * possible object is - * {@link String } - * */ - public String getDatasetId() { - return datasetId; + public void setKey(String value) + { + this.key = value; } /** - * Sets the value of the datasetId property. + * Gets the value of the value property. + * + * @return possible object is {@link String } * - * @param value - * allowed object is - * {@link String } - * */ - public void setDatasetId(String value) { - this.datasetId = value; + public String getValue() + { + return value; } - /** - *

Java class for anonymous complex type. - * - *

The following schema fragment specifies the expected content contained within this class. - * - *

-     * <complexType>
-     *   <complexContent>
-     *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
-     *       <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
-     *       <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
-     *     </restriction>
-     *   </complexContent>
-     * </complexType>
-     * 
+ * Sets the value of the value property. * + * @param value + * allowed object is {@link String } * */ - @XmlAccessorType(XmlAccessType.FIELD) - @XmlType(name = "") - public static class SequenceSetProperties { - - @XmlAttribute(name = "key") - protected String key; - @XmlAttribute(name = "value") - protected String value; - - /** - * Gets the value of the key property. - * - * @return - * possible object is - * {@link String } - * - */ - public String getKey() { - return key; - } - - /** - * Sets the value of the key property. - * - * @param value - * allowed object is - * {@link String } - * - */ - public void setKey(String value) { - this.key = value; - } - - /** - * Gets the value of the value property. - * - * @return - * possible object is - * {@link String } - * - */ - public String getValue() { - return value; - } - - /** - * Sets the value of the value property. - * - * @param value - * allowed object is - * {@link String } - * - */ - public void setValue(String value) { - this.value = value; - } - + public void setValue(String value) + { + this.value = value; } + } + }