X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FSequenceSet.java;h=f08b2256da5fa3a6ce6efeee19dedf5cb3ec4477;hb=8a7a9401835f50b64bab13489de2781e8ced6ba8;hp=7bd7c1e15600ab3861e6d3065063ae88bdc02065;hpb=ce7259404dbb5bbeeb296d32b6a2543b30a7c924;p=jalview.git diff --git a/src/jalview/xml/binding/jalview/SequenceSet.java b/src/jalview/xml/binding/jalview/SequenceSet.java index 7bd7c1e..f08b225 100644 --- a/src/jalview/xml/binding/jalview/SequenceSet.java +++ b/src/jalview/xml/binding/jalview/SequenceSet.java @@ -2,10 +2,9 @@ // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 // See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2018.09.28 at 12:18:54 PM BST +// Generated on: 2023.05.13 at 06:58:41 PM BST // - package jalview.xml.binding.jalview; import java.util.ArrayList; @@ -17,11 +16,13 @@ import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; - /** - *
Java class for anonymous complex type. + *
+ * Java class for anonymous complex type. * - *
The following schema fragment specifies the expected content contained within this class. + *
+ * The following schema fragment specifies the expected content contained within + * this class. * *
* <complexType> @@ -52,267 +53,282 @@ import javax.xml.bind.annotation.XmlType; * */ @XmlAccessorType(XmlAccessType.FIELD) -@XmlType(name = "", propOrder = { - "sequence", - "annotation", - "sequenceSetProperties", - "alcodonFrame" -}) +@XmlType( + name = "", + propOrder = + { "sequence", "annotation", "sequenceSetProperties", "alcodonFrame" }) @XmlRootElement(name = "SequenceSet") -public class SequenceSet { +public class SequenceSet +{ - @XmlElement(name = "Sequence") - protected Listsequence; - @XmlElement(name = "Annotation") - protected List annotation; - protected List sequenceSetProperties; - @XmlElement(name = "AlcodonFrame") - protected List alcodonFrame; - @XmlAttribute(name = "gapChar", required = true) - protected String gapChar; - @XmlAttribute(name = "datasetId") - protected String datasetId; + @XmlElement(name = "Sequence") + protected List sequence; - /** - * Gets the value of the sequence property. - * - * - * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a
set
method for the sequence property. - * - *- * For example, to add a new item, do as follows: - *
- * getSequence().add(newItem); - *- * - * - *- * Objects of the following type(s) are allowed in the list - * {@link Sequence } - * - * - */ - public List
getSequence() { - if (sequence == null) { - sequence = new ArrayList (); - } - return this.sequence; + @XmlElement(name = "Annotation") + protected List annotation; + + protected List sequenceSetProperties; + + @XmlElement(name = "AlcodonFrame") + protected List alcodonFrame; + + @XmlAttribute(name = "gapChar", required = true) + protected String gapChar; + + @XmlAttribute(name = "datasetId") + protected String datasetId; + + /** + * Gets the value of the sequence property. + * + * + * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a
set
method + * for the sequence property. + * + *+ * For example, to add a new item, do as follows: + * + *
+ * getSequence().add(newItem); + *+ * + * + *+ * Objects of the following type(s) are allowed in the list {@link Sequence } + * + * + */ + public List
getSequence() + { + if (sequence == null) + { + sequence = new ArrayList (); } + return this.sequence; + } - /** - * Gets the value of the annotation property. - * - * - * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a
set
method for the annotation property. - * - *- * For example, to add a new item, do as follows: - *
- * getAnnotation().add(newItem); - *- * - * - *- * Objects of the following type(s) are allowed in the list - * {@link Annotation } - * - * - */ - public List
getAnnotation() { - if (annotation == null) { - annotation = new ArrayList (); - } - return this.annotation; + /** + * Gets the value of the annotation property. + * + * + * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a
set
method + * for the annotation property. + * + *+ * For example, to add a new item, do as follows: + * + *
+ * getAnnotation().add(newItem); + *+ * + * + *+ * Objects of the following type(s) are allowed in the list {@link Annotation + * } + * + * + */ + public List
getAnnotation() + { + if (annotation == null) + { + annotation = new ArrayList (); } + return this.annotation; + } - /** - * Gets the value of the sequenceSetProperties property. - * - * - * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a
set
method for the sequenceSetProperties property. - * - *- * For example, to add a new item, do as follows: - *
- * getSequenceSetProperties().add(newItem); - *- * - * - *- * Objects of the following type(s) are allowed in the list - * {@link SequenceSet.SequenceSetProperties } - * - * - */ - public List
getSequenceSetProperties() { - if (sequenceSetProperties == null) { - sequenceSetProperties = new ArrayList (); - } - return this.sequenceSetProperties; + /** + * Gets the value of the sequenceSetProperties property. + * + * + * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a
set
method + * for the sequenceSetProperties property. + * + *+ * For example, to add a new item, do as follows: + * + *
+ * getSequenceSetProperties().add(newItem); + *+ * + * + *+ * Objects of the following type(s) are allowed in the list + * {@link SequenceSet.SequenceSetProperties } + * + * + */ + public List
getSequenceSetProperties() + { + if (sequenceSetProperties == null) + { + sequenceSetProperties = new ArrayList (); } + return this.sequenceSetProperties; + } - /** - * Gets the value of the alcodonFrame property. - * - * - * This accessor method returns a reference to the live list, - * not a snapshot. Therefore any modification you make to the - * returned list will be present inside the JAXB object. - * This is why there is not a
set
method for the alcodonFrame property. - * - *- * For example, to add a new item, do as follows: - *
- * getAlcodonFrame().add(newItem); - *- * - * - *- * Objects of the following type(s) are allowed in the list - * {@link AlcodonFrame } - * - * - */ - public List
getAlcodonFrame() { - if (alcodonFrame == null) { - alcodonFrame = new ArrayList (); - } - return this.alcodonFrame; + /** + * Gets the value of the alcodonFrame property. + * + * + * This accessor method returns a reference to the live list, not a snapshot. + * Therefore any modification you make to the returned list will be present + * inside the JAXB object. This is why there is not a
set
method + * for the alcodonFrame property. + * + *+ * For example, to add a new item, do as follows: + * + *
+ * getAlcodonFrame().add(newItem); + *+ * + * + *+ * Objects of the following type(s) are allowed in the list + * {@link AlcodonFrame } + * + * + */ + public List
getAlcodonFrame() + { + if (alcodonFrame == null) + { + alcodonFrame = new ArrayList (); } + return this.alcodonFrame; + } + + /** + * Gets the value of the gapChar property. + * + * @return possible object is {@link String } + * + */ + public String getGapChar() + { + return gapChar; + } + + /** + * Sets the value of the gapChar property. + * + * @param value + * allowed object is {@link String } + * + */ + public void setGapChar(String value) + { + this.gapChar = value; + } + + /** + * Gets the value of the datasetId property. + * + * @return possible object is {@link String } + * + */ + public String getDatasetId() + { + return datasetId; + } + + /** + * Sets the value of the datasetId property. + * + * @param value + * allowed object is {@link String } + * + */ + public void setDatasetId(String value) + { + this.datasetId = value; + } + + /** + * + * Java class for anonymous complex type. + * + *
+ * The following schema fragment specifies the expected content contained + * within this class. + * + *
+ * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /> + * </restriction> + * </complexContent> + * </complexType> + *+ * + * + */ + @XmlAccessorType(XmlAccessType.FIELD) + @XmlType(name = "") + public static class SequenceSetProperties + { + + @XmlAttribute(name = "key") + protected String key; + + @XmlAttribute(name = "value") + protected String value; /** - * Gets the value of the gapChar property. + * Gets the value of the key property. + * + * @return possible object is {@link String } * - * @return - * possible object is - * {@link String } - * */ - public String getGapChar() { - return gapChar; + public String getKey() + { + return key; } /** - * Sets the value of the gapChar property. + * Sets the value of the key property. * * @param value - * allowed object is - * {@link String } - * - */ - public void setGapChar(String value) { - this.gapChar = value; - } - - /** - * Gets the value of the datasetId property. + * allowed object is {@link String } * - * @return - * possible object is - * {@link String } - * */ - public String getDatasetId() { - return datasetId; + public void setKey(String value) + { + this.key = value; } /** - * Sets the value of the datasetId property. + * Gets the value of the value property. + * + * @return possible object is {@link String } * - * @param value - * allowed object is - * {@link String } - * */ - public void setDatasetId(String value) { - this.datasetId = value; + public String getValue() + { + return value; } - /** - *Java class for anonymous complex type. - * - *
The following schema fragment specifies the expected content contained within this class. - * - *
- * <complexType> - * <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /> - * </restriction> - * </complexContent> - * </complexType> - *+ * Sets the value of the value property. * + * @param value + * allowed object is {@link String } * */ - @XmlAccessorType(XmlAccessType.FIELD) - @XmlType(name = "") - public static class SequenceSetProperties { - - @XmlAttribute(name = "key") - protected String key; - @XmlAttribute(name = "value") - protected String value; - - /** - * Gets the value of the key property. - * - * @return - * possible object is - * {@link String } - * - */ - public String getKey() { - return key; - } - - /** - * Sets the value of the key property. - * - * @param value - * allowed object is - * {@link String } - * - */ - public void setKey(String value) { - this.key = value; - } - - /** - * Gets the value of the value property. - * - * @return - * possible object is - * {@link String } - * - */ - public String getValue() { - return value; - } - - /** - * Sets the value of the value property. - * - * @param value - * allowed object is - * {@link String } - * - */ - public void setValue(String value) { - this.value = value; - } - + public void setValue(String value) + { + this.value = value; } + } + }