X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Funiprot%2FCommentType.java;h=f26c12bfc11279955600c371f63cc5b17a02b1e2;hb=b18a321bae7825d80bae66447fb9b68e445d545f;hp=2227f187bdd5359c99480e4e6f1a813255c949f1;hpb=7b32d373b60d0af55481cfd6d377b2cc1ec035c0;p=jalview.git diff --git a/src/jalview/xml/binding/uniprot/CommentType.java b/src/jalview/xml/binding/uniprot/CommentType.java index 2227f18..0477736 100644 --- a/src/jalview/xml/binding/uniprot/CommentType.java +++ b/src/jalview/xml/binding/uniprot/CommentType.java @@ -1,11 +1,10 @@ // -// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 -// See https://eclipse-ee4j.github.io/jaxb-ri +// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 +// See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2022.02.07 at 04:44:21 PM GMT +// Generated on: 2023.05.13 at 06:58:42 PM BST // - package jalview.xml.binding.uniprot; import java.util.ArrayList; @@ -17,1775 +16,1831 @@ import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlSchemaType; import javax.xml.bind.annotation.XmlType; - /** - * Describes different types of general annotations. - * Equivalent to the flat file CC-line. + * Describes different types of general annotations. Equivalent to the flat file + * CC-line. * - * <p>Java class for commentType complex type. + *
+ * Java class for commentType complex type. * - * <p>The following schema fragment specifies the expected content contained within this class. + *
+ * The following schema fragment specifies the expected content contained within + * this class. * - * <pre> - * <complexType name="commentType"> - * <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <sequence> - * <element name="molecule" type="{http://uniprot.org/uniprot}moleculeType" minOccurs="0"/> - * <choice minOccurs="0"> - * <group ref="{http://uniprot.org/uniprot}bpcCommentGroup"/> - * <sequence> - * <element name="reaction" type="{http://uniprot.org/uniprot}reactionType"/> - * <element name="physiologicalReaction" type="{http://uniprot.org/uniprot}physiologicalReactionType" maxOccurs="2" minOccurs="0"/> - * </sequence> - * <sequence> - * <element name="cofactor" type="{http://uniprot.org/uniprot}cofactorType" maxOccurs="unbounded"/> - * </sequence> - * <sequence> - * <element name="subcellularLocation" type="{http://uniprot.org/uniprot}subcellularLocationType" maxOccurs="unbounded"/> - * </sequence> - * <element name="conflict"> - * <complexType> - * <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <sequence> - * <element name="sequence" minOccurs="0"> - * <complexType> - * <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <attribute name="resource" use="required"> - * <simpleType> - * <restriction base="{http://www.w3.org/2001/XMLSchema}string"> - * <enumeration value="EMBL-CDS"/> - * <enumeration value="EMBL"/> - * </restriction> - * </simpleType> - * </attribute> - * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" /> - * </restriction> - * </complexContent> - * </complexType> - * </element> - * </sequence> - * <attribute name="type" use="required"> - * <simpleType> - * <restriction base="{http://www.w3.org/2001/XMLSchema}string"> - * <enumeration value="frameshift"/> - * <enumeration value="erroneous initiation"/> - * <enumeration value="erroneous termination"/> - * <enumeration value="erroneous gene model prediction"/> - * <enumeration value="erroneous translation"/> - * <enumeration value="miscellaneous discrepancy"/> - * </restriction> - * </simpleType> - * </attribute> - * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" /> - * </restriction> - * </complexContent> - * </complexType> - * </element> - * <sequence> - * <element name="link" maxOccurs="unbounded" minOccurs="0"> - * <complexType> - * <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <attribute name="uri" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" /> - * </restriction> - * </complexContent> - * </complexType> - * </element> - * </sequence> - * <sequence> - * <element name="event" type="{http://uniprot.org/uniprot}eventType" maxOccurs="4"/> - * <element name="isoform" type="{http://uniprot.org/uniprot}isoformType" maxOccurs="unbounded" minOccurs="0"/> - * </sequence> - * <sequence> - * <element name="interactant" type="{http://uniprot.org/uniprot}interactantType" maxOccurs="2" minOccurs="2"/> - * <element name="organismsDiffer" type="{http://www.w3.org/2001/XMLSchema}boolean"/> - * <element name="experiments" type="{http://www.w3.org/2001/XMLSchema}int"/> - * </sequence> - * <element name="disease"> - * <complexType> - * <complexContent> - * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> - * <sequence> - * <element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/> - * <element name="acronym" type="{http://www.w3.org/2001/XMLSchema}string"/> - * <element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/> - * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/> - * </sequence> - * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> - * </restriction> - * </complexContent> - * </complexType> - * </element> - * </choice> - * <element name="location" type="{http://uniprot.org/uniprot}locationType" maxOccurs="unbounded" minOccurs="0"/> - * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/> - * </sequence> - * <attribute name="type" use="required"> - * <simpleType> - * <restriction base="{http://www.w3.org/2001/XMLSchema}string"> - * <enumeration value="allergen"/> - * <enumeration value="alternative products"/> - * <enumeration value="biotechnology"/> - * <enumeration value="biophysicochemical properties"/> - * <enumeration value="catalytic activity"/> - * <enumeration value="caution"/> - * <enumeration value="cofactor"/> - * <enumeration value="developmental stage"/> - * <enumeration value="disease"/> - * <enumeration value="domain"/> - * <enumeration value="disruption phenotype"/> - * <enumeration value="activity regulation"/> - * <enumeration value="function"/> - * <enumeration value="induction"/> - * <enumeration value="miscellaneous"/> - * <enumeration value="pathway"/> - * <enumeration value="pharmaceutical"/> - * <enumeration value="polymorphism"/> - * <enumeration value="PTM"/> - * <enumeration value="RNA editing"/> - * <enumeration value="similarity"/> - * <enumeration value="subcellular location"/> - * <enumeration value="sequence caution"/> - * <enumeration value="subunit"/> - * <enumeration value="tissue specificity"/> - * <enumeration value="toxic dose"/> - * <enumeration value="online information"/> - * <enumeration value="mass spectrometry"/> - * <enumeration value="interaction"/> - * </restriction> - * </simpleType> - * </attribute> - * <attribute name="locationType" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="mass" type="{http://www.w3.org/2001/XMLSchema}float" /> - * <attribute name="error" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="method" type="{http://www.w3.org/2001/XMLSchema}string" /> - * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /> - * </restriction> - * </complexContent> - * </complexType> - * </pre> + *
+ * <complexType name="commentType"> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <sequence> + * <element name="molecule" type="{http://uniprot.org/uniprot}moleculeType" minOccurs="0"/> + * <choice minOccurs="0"> + * <group ref="{http://uniprot.org/uniprot}bpcCommentGroup"/> + * <sequence> + * <element name="reaction" type="{http://uniprot.org/uniprot}reactionType"/> + * <element name="physiologicalReaction" type="{http://uniprot.org/uniprot}physiologicalReactionType" maxOccurs="2" minOccurs="0"/> + * </sequence> + * <sequence> + * <element name="cofactor" type="{http://uniprot.org/uniprot}cofactorType" maxOccurs="unbounded"/> + * </sequence> + * <sequence> + * <element name="subcellularLocation" type="{http://uniprot.org/uniprot}subcellularLocationType" maxOccurs="unbounded"/> + * </sequence> + * <element name="conflict"> + * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <sequence> + * <element name="sequence" minOccurs="0"> + * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <attribute name="resource" use="required"> + * <simpleType> + * <restriction base="{http://www.w3.org/2001/XMLSchema}string"> + * <enumeration value="EMBL-CDS"/> + * <enumeration value="EMBL"/> + * </restriction> + * </simpleType> + * </attribute> + * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" /> + * </restriction> + * </complexContent> + * </complexType> + * </element> + * </sequence> + * <attribute name="type" use="required"> + * <simpleType> + * <restriction base="{http://www.w3.org/2001/XMLSchema}string"> + * <enumeration value="frameshift"/> + * <enumeration value="erroneous initiation"/> + * <enumeration value="erroneous termination"/> + * <enumeration value="erroneous gene model prediction"/> + * <enumeration value="erroneous translation"/> + * <enumeration value="miscellaneous discrepancy"/> + * </restriction> + * </simpleType> + * </attribute> + * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" /> + * </restriction> + * </complexContent> + * </complexType> + * </element> + * <sequence> + * <element name="link" maxOccurs="unbounded" minOccurs="0"> + * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <attribute name="uri" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" /> + * </restriction> + * </complexContent> + * </complexType> + * </element> + * </sequence> + * <sequence> + * <element name="event" type="{http://uniprot.org/uniprot}eventType" maxOccurs="4"/> + * <element name="isoform" type="{http://uniprot.org/uniprot}isoformType" maxOccurs="unbounded" minOccurs="0"/> + * </sequence> + * <sequence> + * <element name="interactant" type="{http://uniprot.org/uniprot}interactantType" maxOccurs="2" minOccurs="2"/> + * <element name="organismsDiffer" type="{http://www.w3.org/2001/XMLSchema}boolean"/> + * <element name="experiments" type="{http://www.w3.org/2001/XMLSchema}int"/> + * </sequence> + * <element name="disease"> + * <complexType> + * <complexContent> + * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> + * <sequence> + * <element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/> + * <element name="acronym" type="{http://www.w3.org/2001/XMLSchema}string"/> + * <element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/> + * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/> + * </sequence> + * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> + * </restriction> + * </complexContent> + * </complexType> + * </element> + * </choice> + * <element name="location" type="{http://uniprot.org/uniprot}locationType" maxOccurs="unbounded" minOccurs="0"/> + * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/> + * </sequence> + * <attribute name="type" use="required"> + * <simpleType> + * <restriction base="{http://www.w3.org/2001/XMLSchema}string"> + * <enumeration value="allergen"/> + * <enumeration value="alternative products"/> + * <enumeration value="biotechnology"/> + * <enumeration value="biophysicochemical properties"/> + * <enumeration value="catalytic activity"/> + * <enumeration value="caution"/> + * <enumeration value="cofactor"/> + * <enumeration value="developmental stage"/> + * <enumeration value="disease"/> + * <enumeration value="domain"/> + * <enumeration value="disruption phenotype"/> + * <enumeration value="activity regulation"/> + * <enumeration value="function"/> + * <enumeration value="induction"/> + * <enumeration value="miscellaneous"/> + * <enumeration value="pathway"/> + * <enumeration value="pharmaceutical"/> + * <enumeration value="polymorphism"/> + * <enumeration value="PTM"/> + * <enumeration value="RNA editing"/> + * <enumeration value="similarity"/> + * <enumeration value="subcellular location"/> + * <enumeration value="sequence caution"/> + * <enumeration value="subunit"/> + * <enumeration value="tissue specificity"/> + * <enumeration value="toxic dose"/> + * <enumeration value="online information"/> + * <enumeration value="mass spectrometry"/> + * <enumeration value="interaction"/> + * </restriction> + * </simpleType> + * </attribute> + * <attribute name="locationType" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="mass" type="{http://www.w3.org/2001/XMLSchema}float" /> + * <attribute name="error" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="method" type="{http://www.w3.org/2001/XMLSchema}string" /> + * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /> + * </restriction> + * </complexContent> + * </complexType> + ** * */ @XmlAccessorType(XmlAccessType.FIELD) -@XmlType(name = "commentType", propOrder = { - "molecule", - "absorption", - "kinetics", - "phDependence", - "redoxPotential", - "temperatureDependence", - "reaction", - "physiologicalReaction", - "cofactor", - "subcellularLocation", - "conflict", - "link", - "event", - "isoform", - "interactant", - "organismsDiffer", - "experiments", - "disease", - "location", - "text" -}) -public class CommentType { - - protected MoleculeType molecule; - protected CommentType.Absorption absorption; - protected CommentType.Kinetics kinetics; - protected CommentType.PhDependence phDependence; - protected CommentType.RedoxPotential redoxPotential; - protected CommentType.TemperatureDependence temperatureDependence; - protected ReactionType reaction; - protected List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a set
method
+ * for the physiologicalReaction property.
+ *
+ *
+ * For example, to add a new item, do as follows: + * + *
+ * getPhysiologicalReaction().add(newItem); + *+ * + * + *
+ * Objects of the following type(s) are allowed in the list
+ * {@link PhysiologicalReactionType }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link CofactorType }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link SubcellularLocationType }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link CommentType.Link }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list {@link EventType }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list {@link IsoformType
+ * }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link InteractantType }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link LocationType }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link EvidencedStringType }
+ *
+ *
+ */
+ public List
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list {@link Integer }
+ *
+ *
+ */
+ public List
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ *
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ *
* For example, to add a new item, do as follows:
- * <pre>
- * getSubcellularLocation().add(newItem);
- * </pre>
*
+ *
* Objects of the following type(s) are allowed in the list
- * {@link SubcellularLocationType }
+ * {@link EvidencedStringType }
*
*
*/
- public List
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ *
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ *
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ *
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ *
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ *
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link EvidencedStringType }
+ *
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setMethod(String value) {
- this.method = value;
+ public List
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ *
* For example, to add a new item, do as follows:
- * <pre>
- * getEvidence().add(newItem);
- * </pre>
*
+ *
* Objects of the following type(s) are allowed in the list
- * {@link Integer }
+ * {@link EvidencedStringType }
*
*
*/
- public List
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ *
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link EvidencedStringType }
*
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "max",
- "text"
- })
- public static class Absorption {
-
- protected EvidencedStringType max;
- protected List
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ *
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ *
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ *
+ * For example, to add a new item, do as follows:
*
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link EvidencedStringType }
*
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Link {
-
- @XmlAttribute(name = "uri", required = true)
- @XmlSchemaType(name = "anyURI")
- protected String uri;
-
- /**
- * Gets the value of the uri property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getUri() {
- return uri;
- }
-
- /**
- * Sets the value of the uri property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setUri(String value) {
- this.uri = value;
- }
-
+ public List
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ *
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ *
+ * For example, to add a new item, do as follows:
*
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link EvidencedStringType }
*
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "text"
- })
- public static class RedoxPotential {
-
- @XmlElement(required = true)
- protected List
+ * Java class for anonymous complex type.
+ *
+ *
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ *
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ *
+ * For example, to add a new item, do as follows:
+ *
+ *
+ * Objects of the following type(s) are allowed in the list
+ * {@link EvidencedStringType }
*
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "text"
- })
- public static class TemperatureDependence {
-
- @XmlElement(required = true)
- protected Listset
method
+ * for the cofactor property.
+ *
+ *
+ * getCofactor().add(newItem);
+ *
+ *
+ *
+ * set
method
+ * for the subcellularLocation property.
+ *
+ *
+ * getSubcellularLocation().add(newItem);
+ *
+ *
+ *
+ * set
method
+ * for the link property.
+ *
+ *
+ * getLink().add(newItem);
+ *
+ *
+ *
+ * set
method
+ * for the event property.
+ *
+ *
+ * getEvent().add(newItem);
+ *
+ *
+ *
+ * set
method
+ * for the isoform property.
+ *
+ *
+ * getIsoform().add(newItem);
+ *
+ *
+ *
+ * set
method
+ * for the interactant property.
+ *
+ *
+ * getInteractant().add(newItem);
+ *
+ *
+ *
+ * set
method
+ * for the location property.
+ *
+ *
+ * getLocation().add(newItem);
+ *
+ *
+ *
+ * set
method
+ * for the text property.
+ *
+ *
+ * getText().add(newItem);
+ *
+ *
+ *
+ * set
method
+ * for the evidence property.
+ *
+ *
+ * getEvidence().add(newItem);
+ *
+ *
+ *
+ *
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="max" type="{http://uniprot.org/uniprot}evidencedStringType" minOccurs="0"/>
+ * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "max", "text" })
+ public static class Absorption
+ {
+
+ protected EvidencedStringType max;
+
+ protected Listset
method for the text property.
*
- * <p>
+ *
+ * getText().add(newItem);
+ *
*
- * <p>
+ *
+ *
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="sequence" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="resource" use="required">
+ * <simpleType>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ * <enumeration value="EMBL-CDS"/>
+ * <enumeration value="EMBL"/>
+ * </restriction>
+ * </simpleType>
+ * </attribute>
+ * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="type" use="required">
+ * <simpleType>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ * <enumeration value="frameshift"/>
+ * <enumeration value="erroneous initiation"/>
+ * <enumeration value="erroneous termination"/>
+ * <enumeration value="erroneous gene model prediction"/>
+ * <enumeration value="erroneous translation"/>
+ * <enumeration value="miscellaneous discrepancy"/>
+ * </restriction>
+ * </simpleType>
+ * </attribute>
+ * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "sequence" })
+ public static class Conflict
+ {
+
+ protected CommentType.Conflict.Sequence sequence;
- /**
- * Sets the value of the conflict property.
- *
- * @param value
- * allowed object is
- * {@link CommentType.Conflict }
- *
- */
- public void setConflict(CommentType.Conflict value) {
- this.conflict = value;
- }
+ @XmlAttribute(name = "type", required = true)
+ protected String type;
+
+ @XmlAttribute(name = "ref")
+ protected String ref;
/**
- * Gets the value of the link property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the link property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getLink().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link CommentType.Link }
+ * Gets the value of the sequence property.
*
+ * @return possible object is {@link CommentType.Conflict.Sequence }
*
*/
- public List
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="resource" use="required">
+ * <simpleType>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ * <enumeration value="EMBL-CDS"/>
+ * <enumeration value="EMBL"/>
+ * </restriction>
+ * </simpleType>
+ * </attribute>
+ * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
*
- * @param value
- * allowed object is
- * {@link Integer }
- *
- */
- public void setExperiments(Integer value) {
- this.experiments = value;
- }
-
- /**
- * Gets the value of the disease property.
*
- * @return
- * possible object is
- * {@link CommentType.Disease }
- *
*/
- public CommentType.Disease getDisease() {
- return disease;
- }
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Sequence
+ {
+
+ @XmlAttribute(name = "resource", required = true)
+ protected String resource;
+
+ @XmlAttribute(name = "id", required = true)
+ protected String id;
+
+ @XmlAttribute(name = "version")
+ protected Integer version;
+
+ /**
+ * Gets the value of the resource property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getResource()
+ {
+ return resource;
+ }
+
+ /**
+ * Sets the value of the resource property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setResource(String value)
+ {
+ this.resource = value;
+ }
+
+ /**
+ * Gets the value of the id property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getId()
+ {
+ return id;
+ }
+
+ /**
+ * Sets the value of the id property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setId(String value)
+ {
+ this.id = value;
+ }
+
+ /**
+ * Gets the value of the version property.
+ *
+ * @return possible object is {@link Integer }
+ *
+ */
+ public Integer getVersion()
+ {
+ return version;
+ }
+
+ /**
+ * Sets the value of the version property.
+ *
+ * @param value
+ * allowed object is {@link Integer }
+ *
+ */
+ public void setVersion(Integer value)
+ {
+ this.version = value;
+ }
- /**
- * Sets the value of the disease property.
- *
- * @param value
- * allowed object is
- * {@link CommentType.Disease }
- *
- */
- public void setDisease(CommentType.Disease value) {
- this.disease = value;
}
+ }
+
+ /**
+ *
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/>
+ * <element name="acronym" type="{http://www.w3.org/2001/XMLSchema}string"/>
+ * <element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/>
+ * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/>
+ * </sequence>
+ * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(
+ name = "",
+ propOrder =
+ { "name", "acronym", "description", "dbReference" })
+ public static class Disease
+ {
+
+ @XmlElement(required = true)
+ protected String name;
+
+ @XmlElement(required = true)
+ protected String acronym;
+
+ @XmlElement(required = true)
+ protected String description;
+
+ @XmlElement(required = true)
+ protected DbReferenceType dbReference;
+
+ @XmlAttribute(name = "id", required = true)
+ protected String id;
+
/**
- * Gets the value of the location property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the location property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getLocation().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link LocationType }
+ * Gets the value of the name property.
*
+ * @return possible object is {@link String }
*
*/
- public List
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="KM" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="Vmax" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "km", "vmax", "text" })
+ public static class Kinetics
+ {
+
+ @XmlElement(name = "KM")
+ protected Listset
method for the km property.
+ *
+ *
+ * getKM().add(newItem);
+ *
+ *
+ *
+ * set
method for the vmax property.
*
- * <p>
+ *
+ * getVmax().add(newItem);
+ *
*
- * <p>
+ *
+ * set
method for the text property.
+ *
+ *
+ * getText().add(newItem);
+ *
*
- * <p>The following schema fragment specifies the expected content contained within this class.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="max" type="{http://uniprot.org/uniprot}evidencedStringType" minOccurs="0"/>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ *
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="uri" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Link
+ {
+
+ @XmlAttribute(name = "uri", required = true)
+ @XmlSchemaType(name = "anyURI")
+ protected String uri;
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="sequence" minOccurs="0">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="resource" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="EMBL-CDS"/>
- * <enumeration value="EMBL"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="type" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="frameshift"/>
- * <enumeration value="erroneous initiation"/>
- * <enumeration value="erroneous termination"/>
- * <enumeration value="erroneous gene model prediction"/>
- * <enumeration value="erroneous translation"/>
- * <enumeration value="miscellaneous discrepancy"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * Gets the value of the uri property.
*
+ * @return possible object is {@link String }
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "sequence"
- })
- public static class Conflict {
-
- protected CommentType.Conflict.Sequence sequence;
- @XmlAttribute(name = "type", required = true)
- protected String type;
- @XmlAttribute(name = "ref")
- protected String ref;
-
- /**
- * Gets the value of the sequence property.
- *
- * @return
- * possible object is
- * {@link CommentType.Conflict.Sequence }
- *
- */
- public CommentType.Conflict.Sequence getSequence() {
- return sequence;
- }
-
- /**
- * Sets the value of the sequence property.
- *
- * @param value
- * allowed object is
- * {@link CommentType.Conflict.Sequence }
- *
- */
- public void setSequence(CommentType.Conflict.Sequence value) {
- this.sequence = value;
- }
-
- /**
- * Gets the value of the type property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getType() {
- return type;
- }
-
- /**
- * Sets the value of the type property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setType(String value) {
- this.type = value;
- }
-
- /**
- * Gets the value of the ref property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getRef() {
- return ref;
- }
-
- /**
- * Sets the value of the ref property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setRef(String value) {
- this.ref = value;
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="resource" use="required">
- * <simpleType>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- * <enumeration value="EMBL-CDS"/>
- * <enumeration value="EMBL"/>
- * </restriction>
- * </simpleType>
- * </attribute>
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="version" type="{http://www.w3.org/2001/XMLSchema}int" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Sequence {
-
- @XmlAttribute(name = "resource", required = true)
- protected String resource;
- @XmlAttribute(name = "id", required = true)
- protected String id;
- @XmlAttribute(name = "version")
- protected Integer version;
-
- /**
- * Gets the value of the resource property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getResource() {
- return resource;
- }
-
- /**
- * Sets the value of the resource property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setResource(String value) {
- this.resource = value;
- }
-
- /**
- * Gets the value of the id property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getId() {
- return id;
- }
-
- /**
- * Sets the value of the id property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setId(String value) {
- this.id = value;
- }
-
- /**
- * Gets the value of the version property.
- *
- * @return
- * possible object is
- * {@link Integer }
- *
- */
- public Integer getVersion() {
- return version;
- }
-
- /**
- * Sets the value of the version property.
- *
- * @param value
- * allowed object is
- * {@link Integer }
- *
- */
- public void setVersion(Integer value) {
- this.version = value;
- }
-
- }
-
+ public String getUri()
+ {
+ return uri;
}
-
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="name" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="acronym" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType"/>
- * </sequence>
- * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * Sets the value of the uri property.
*
+ * @param value
+ * allowed object is {@link String }
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "name",
- "acronym",
- "description",
- "dbReference"
- })
- public static class Disease {
-
- @XmlElement(required = true)
- protected String name;
- @XmlElement(required = true)
- protected String acronym;
- @XmlElement(required = true)
- protected String description;
- @XmlElement(required = true)
- protected DbReferenceType dbReference;
- @XmlAttribute(name = "id", required = true)
- protected String id;
-
- /**
- * Gets the value of the name property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getName() {
- return name;
- }
-
- /**
- * Sets the value of the name property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setName(String value) {
- this.name = value;
- }
-
- /**
- * Gets the value of the acronym property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getAcronym() {
- return acronym;
- }
-
- /**
- * Sets the value of the acronym property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setAcronym(String value) {
- this.acronym = value;
- }
-
- /**
- * Gets the value of the description property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getDescription() {
- return description;
- }
-
- /**
- * Sets the value of the description property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setDescription(String value) {
- this.description = value;
- }
-
- /**
- * Gets the value of the dbReference property.
- *
- * @return
- * possible object is
- * {@link DbReferenceType }
- *
- */
- public DbReferenceType getDbReference() {
- return dbReference;
- }
-
- /**
- * Sets the value of the dbReference property.
- *
- * @param value
- * allowed object is
- * {@link DbReferenceType }
- *
- */
- public void setDbReference(DbReferenceType value) {
- this.dbReference = value;
- }
-
- /**
- * Gets the value of the id property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getId() {
- return id;
- }
-
- /**
- * Sets the value of the id property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setId(String value) {
- this.id = value;
- }
-
+ public void setUri(String value)
+ {
+ this.uri = value;
}
+ }
+
+ /**
+ *
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "text" })
+ public static class PhDependence
+ {
+
+ @XmlElement(required = true)
+ protected Listset
method for the text property.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="KM" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="Vmax" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded" minOccurs="0"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ *
+ * getText().add(newItem);
+ *
*
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "km",
- "vmax",
- "text"
- })
- public static class Kinetics {
-
- @XmlElement(name = "KM")
- protected List
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "text" })
+ public static class RedoxPotential
+ {
+
+ @XmlElement(required = true)
+ protected Listset
method for the text property.
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ *
+ * getText().add(newItem);
+ *
*
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "text"
- })
- public static class PhDependence {
-
- @XmlElement(required = true)
- protected List
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ *
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "text" })
+ public static class TemperatureDependence
+ {
+
+ @XmlElement(required = true)
+ protected Listset
method for the text property.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ *
+ * getText().add(newItem);
+ *
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="text" type="{http://uniprot.org/uniprot}evidencedStringType" maxOccurs="unbounded"/>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ *
+ *