X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Funiprot%2FFeatureType.java;h=d1ba929b8abc33781862a40a4a98fd15994b318e;hb=refs%2Fheads%2Fbug%2FJAL-3785autoOverviewTitle;hp=e951659bed1355e2714661324679a9c44d8958af;hpb=aaaf192e6f685c0917c217d011a077ca1883b2fd;p=jalview.git diff --git a/src/jalview/xml/binding/uniprot/FeatureType.java b/src/jalview/xml/binding/uniprot/FeatureType.java index e951659..d1ba929 100644 --- a/src/jalview/xml/binding/uniprot/FeatureType.java +++ b/src/jalview/xml/binding/uniprot/FeatureType.java @@ -1,8 +1,8 @@ // -// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 -// See http://java.sun.com/xml/jaxb +// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 +// See https://eclipse-ee4j.github.io/jaxb-ri // Any modifications to this file will be lost upon recompilation of the source schema. -// Generated on: 2019.04.05 at 08:01:44 AM BST +// Generated on: 2022.02.07 at 04:44:21 PM GMT // @@ -21,81 +21,81 @@ import javax.xml.bind.annotation.XmlType; * Describes different types of sequence annotations. * Equivalent to the flat file FT-line. * - *

Java class for featureType complex type. + * <p>Java class for featureType complex type. * - *

The following schema fragment specifies the expected content contained within this class. + * <p>The following schema fragment specifies the expected content contained within this class. * - *

- * <complexType name="featureType">
- *   <complexContent>
- *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *       <sequence>
- *         <element name="original" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- *         <element name="variation" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- *         <element name="location" type="{http://uniprot.org/uniprot}locationType"/>
- *       </sequence>
- *       <attribute name="type" use="required">
- *         <simpleType>
- *           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- *             <enumeration value="active site"/>
- *             <enumeration value="binding site"/>
- *             <enumeration value="calcium-binding region"/>
- *             <enumeration value="chain"/>
- *             <enumeration value="coiled-coil region"/>
- *             <enumeration value="compositionally biased region"/>
- *             <enumeration value="cross-link"/>
- *             <enumeration value="disulfide bond"/>
- *             <enumeration value="DNA-binding region"/>
- *             <enumeration value="domain"/>
- *             <enumeration value="glycosylation site"/>
- *             <enumeration value="helix"/>
- *             <enumeration value="initiator methionine"/>
- *             <enumeration value="lipid moiety-binding region"/>
- *             <enumeration value="metal ion-binding site"/>
- *             <enumeration value="modified residue"/>
- *             <enumeration value="mutagenesis site"/>
- *             <enumeration value="non-consecutive residues"/>
- *             <enumeration value="non-terminal residue"/>
- *             <enumeration value="nucleotide phosphate-binding region"/>
- *             <enumeration value="peptide"/>
- *             <enumeration value="propeptide"/>
- *             <enumeration value="region of interest"/>
- *             <enumeration value="repeat"/>
- *             <enumeration value="non-standard amino acid"/>
- *             <enumeration value="sequence conflict"/>
- *             <enumeration value="sequence variant"/>
- *             <enumeration value="short sequence motif"/>
- *             <enumeration value="signal peptide"/>
- *             <enumeration value="site"/>
- *             <enumeration value="splice variant"/>
- *             <enumeration value="strand"/>
- *             <enumeration value="topological domain"/>
- *             <enumeration value="transit peptide"/>
- *             <enumeration value="transmembrane region"/>
- *             <enumeration value="turn"/>
- *             <enumeration value="unsure residue"/>
- *             <enumeration value="zinc finger region"/>
- *             <enumeration value="intramembrane region"/>
- *           </restriction>
- *         </simpleType>
- *       </attribute>
- *       <attribute name="status">
- *         <simpleType>
- *           <restriction base="{http://www.w3.org/2001/XMLSchema}string">
- *             <enumeration value="by similarity"/>
- *             <enumeration value="probable"/>
- *             <enumeration value="potential"/>
- *           </restriction>
- *         </simpleType>
- *       </attribute>
- *       <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
- *       <attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
- *       <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
- *       <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
- *     </restriction>
- *   </complexContent>
- * </complexType>
- * 
+ * <pre> + * &lt;complexType name="featureType"&gt; + * &lt;complexContent&gt; + * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt; + * &lt;sequence&gt; + * &lt;element name="original" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt; + * &lt;element name="variation" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt; + * &lt;element name="location" type="{http://uniprot.org/uniprot}locationType"/&gt; + * &lt;/sequence&gt; + * &lt;attribute name="type" use="required"&gt; + * &lt;simpleType&gt; + * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt; + * &lt;enumeration value="active site"/&gt; + * &lt;enumeration value="binding site"/&gt; + * &lt;enumeration value="calcium-binding region"/&gt; + * &lt;enumeration value="chain"/&gt; + * &lt;enumeration value="coiled-coil region"/&gt; + * &lt;enumeration value="compositionally biased region"/&gt; + * &lt;enumeration value="cross-link"/&gt; + * &lt;enumeration value="disulfide bond"/&gt; + * &lt;enumeration value="DNA-binding region"/&gt; + * &lt;enumeration value="domain"/&gt; + * &lt;enumeration value="glycosylation site"/&gt; + * &lt;enumeration value="helix"/&gt; + * &lt;enumeration value="initiator methionine"/&gt; + * &lt;enumeration value="lipid moiety-binding region"/&gt; + * &lt;enumeration value="metal ion-binding site"/&gt; + * &lt;enumeration value="modified residue"/&gt; + * &lt;enumeration value="mutagenesis site"/&gt; + * &lt;enumeration value="non-consecutive residues"/&gt; + * &lt;enumeration value="non-terminal residue"/&gt; + * &lt;enumeration value="nucleotide phosphate-binding region"/&gt; + * &lt;enumeration value="peptide"/&gt; + * &lt;enumeration value="propeptide"/&gt; + * &lt;enumeration value="region of interest"/&gt; + * &lt;enumeration value="repeat"/&gt; + * &lt;enumeration value="non-standard amino acid"/&gt; + * &lt;enumeration value="sequence conflict"/&gt; + * &lt;enumeration value="sequence variant"/&gt; + * &lt;enumeration value="short sequence motif"/&gt; + * &lt;enumeration value="signal peptide"/&gt; + * &lt;enumeration value="site"/&gt; + * &lt;enumeration value="splice variant"/&gt; + * &lt;enumeration value="strand"/&gt; + * &lt;enumeration value="topological domain"/&gt; + * &lt;enumeration value="transit peptide"/&gt; + * &lt;enumeration value="transmembrane region"/&gt; + * &lt;enumeration value="turn"/&gt; + * &lt;enumeration value="unsure residue"/&gt; + * &lt;enumeration value="zinc finger region"/&gt; + * &lt;enumeration value="intramembrane region"/&gt; + * &lt;/restriction&gt; + * &lt;/simpleType&gt; + * &lt;/attribute&gt; + * &lt;attribute name="status"&gt; + * &lt;simpleType&gt; + * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt; + * &lt;enumeration value="by similarity"/&gt; + * &lt;enumeration value="probable"/&gt; + * &lt;enumeration value="potential"/&gt; + * &lt;/restriction&gt; + * &lt;/simpleType&gt; + * &lt;/attribute&gt; + * &lt;attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt; + * &lt;attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" /&gt; + * &lt;/restriction&gt; + * &lt;/complexContent&gt; + * &lt;/complexType&gt; + * </pre> * * */ @@ -151,20 +151,20 @@ public class FeatureType { /** * Gets the value of the variation property. * - *

+ * <p> * This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. - * This is why there is not a set method for the variation property. + * This is why there is not a <CODE>set</CODE> method for the variation property. * - *

+ * <p> * For example, to add a new item, do as follows: - *

+     * <pre>
      *    getVariation().add(newItem);
-     * 
+ * </pre> * * - *

+ * <p> * Objects of the following type(s) are allowed in the list * {@link String } * @@ -300,20 +300,20 @@ public class FeatureType { /** * Gets the value of the evidence property. * - *

+ * <p> * This accessor method returns a reference to the live list, * not a snapshot. Therefore any modification you make to the * returned list will be present inside the JAXB object. - * This is why there is not a set method for the evidence property. + * This is why there is not a <CODE>set</CODE> method for the evidence property. * - *

+ * <p> * For example, to add a new item, do as follows: - *

+     * <pre>
      *    getEvidence().add(newItem);
-     * 
+ * </pre> * * - *

+ * <p> * Objects of the following type(s) are allowed in the list * {@link Integer } *