X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fmc_view%2FPDBfile.java;h=21d3dcb408599093fe9a10e4fcc53696ed681022;hb=cdc539ef6f32d74747ab857831268dd5954b28f5;hp=04eda421cef916b8449efc743839d665cd0a315e;hpb=e358885b67e52b9a2d78dc849e7ae746eab15e54;p=jalview.git diff --git a/src/mc_view/PDBfile.java b/src/mc_view/PDBfile.java index 04eda42..21d3dcb 100755 --- a/src/mc_view/PDBfile.java +++ b/src/mc_view/PDBfile.java @@ -20,6 +20,12 @@ */ package mc_view; +import java.io.IOException; +import java.util.ArrayList; +import java.util.Hashtable; +import java.util.List; +import java.util.Vector; + import jalview.datamodel.AlignmentAnnotation; import jalview.datamodel.DBRefSource; import jalview.datamodel.SequenceI; @@ -28,12 +34,6 @@ import jalview.io.FileParse; import jalview.io.StructureFile; import jalview.util.MessageManager; -import java.io.IOException; -import java.util.ArrayList; -import java.util.Hashtable; -import java.util.List; -import java.util.Vector; - public class PDBfile extends StructureFile { private static String CALC_ID_PREFIX = "JalviewPDB"; @@ -152,8 +152,10 @@ public class PDBfile extends StructureFile if (tmpchain != null) { tmpchain.atoms.addElement(tmpatom); - } else + } + else { + // PDBfile never handles alphafold models tmpchain = new PDBChain(getId(), tmpatom.chain); getChains().add(tmpchain); tmpchain.atoms.addElement(tmpatom);