X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Forg%2Fvamsas%2Fclient%2Fsimpleclient%2FVamsasFile.java;fp=src%2Forg%2Fvamsas%2Fclient%2Fsimpleclient%2FVamsasFile.java;h=0000000000000000000000000000000000000000;hb=156ad51b0a85ed5902f7f9ff051620c832acbea6;hp=3dd2581e8186ebecc0d77cdc133781233cf1c49b;hpb=5c0c34895c290164caad28e0aeac86b5a52ee655;p=vamsas.git

diff --git a/src/org/vamsas/client/simpleclient/VamsasFile.java b/src/org/vamsas/client/simpleclient/VamsasFile.java
deleted file mode 100644
index 3dd2581..0000000
--- a/src/org/vamsas/client/simpleclient/VamsasFile.java
+++ /dev/null
@@ -1,100 +0,0 @@
-
-package org.vamsas.client.simpleclient;
-
-import java.io.File;
-import java.io.FileOutputStream;
-import java.io.FileReader;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-import java.io.PrintWriter;
-import java.util.Timer;
-import java.util.jar.JarEntry;
-import java.util.jar.JarFile;
-import java.util.jar.JarInputStream;
-import java.util.jar.JarOutputStream;
-
-import org.vamsas.objects.core.LockFileDescriptor;
-
-/**
- * low level vamsas document management routines
- * analogous to ClientsFile
- * Grew out of io tests on VamsasArchive class in org.vamsas.test.simpleclient.VamsasArchive
- * This class is not thread safe.
- * @author jimp
- *
- */
-public class VamsasFile extends SessionFile {
-  /**
-   * 
-   * Connect to an existing Vamsas document in a given sessionDir
-   * or create a new one.
-   * 
-   * @param sessionDir
-   * @throws java.io.IOException
-   */
-  public VamsasFile(File sessionFile) throws java.io.IOException {
-    super(sessionFile);
-  }
-  /**
-   * 
-   * @return the VamsasFile
-   */
-  public File getVamsasFile() {
-    return sessionFile;
-  }
-  /**
-   * Expand a previously stored session into the sessionDir
-   * @param sessionDir
-   * @param storedSession
-   
-   public VamsasFile(File sessionDir, JarFile storedSession) throws IOException {
-    // check if sessionDir is live or not
-    if (!sessionDir.exists()) {
-      sessionDir.mkdir();
-    }
-    
-    {
-      // check its actually a writable directory
-    }
-    
-    File sfile = new File(sessionDir, "vamsas.jar");
-    VamsasFile(sfile);
-    // if live - try to merge storedSession with sessionDir
-    //  - will probably fail through duplicate Vobject references needing to be dereferenced.
-    // TODO: think of a way of specifying vorba_id scope for an application's references to allow merging of one vamsasDocument with another.
-    
-  }
-  */
-  /**
-   * public interface for getting a lock.
-   * The lock object is internally referenced 
-   * so the lock will persist even after the
-   * return value of the method goes out of scope.
-   * @return null if lock couldn't be got or a valid Lock object.
-   */
-  public Lock getLock() {
-    if (lockFile())
-      return fileLock;
-    return null;
-  }
-  /**
-   * 
-   * @param extantLock
-   * @return null, extantLock or new Lock.
-   */
-  public Lock getLock(Lock extantLock) {
-    if (lockFile(extantLock))
-      return fileLock;
-    return null;
-  }
-  /**
-   * explicitly unlocks vamsas file.
-   * if you have called getLock() you *must* 
-   * call this to release the lock.
-   */
-  public void unLock() {
-    this.unlockFile();
-  }
-  
-}