X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Forg%2Fvamsas%2Fobjects%2Fcore%2FAlignmentSequenceAnnotationDescriptor.java;fp=src%2Forg%2Fvamsas%2Fobjects%2Fcore%2FAlignmentSequenceAnnotationDescriptor.java;h=a4aa126d7a7328f3ce36da3f3594949d4e1ba7e0;hb=8102c1325cac1288977f498c87924264d3037151;hp=722269de6a1433453072d75a8cc2f20c791db45d;hpb=d4199f5cfea3a90baeb956c4beaa2f3e8c0597c6;p=vamsas.git

diff --git a/src/org/vamsas/objects/core/AlignmentSequenceAnnotationDescriptor.java b/src/org/vamsas/objects/core/AlignmentSequenceAnnotationDescriptor.java
index 722269d..a4aa126 100644
--- a/src/org/vamsas/objects/core/AlignmentSequenceAnnotationDescriptor.java
+++ b/src/org/vamsas/objects/core/AlignmentSequenceAnnotationDescriptor.java
@@ -1,255 +1,255 @@
-/*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package org.vamsas.objects.core;
-
-  //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.mapping.AccessMode;
-import org.exolab.castor.xml.TypeValidator;
-import org.exolab.castor.xml.XMLFieldDescriptor;
-import org.exolab.castor.xml.validators.*;
-
-/**
- * Class AlignmentSequenceAnnotationDescriptor.
- * 
- * @version $Revision$ $Date$
- */
-public class AlignmentSequenceAnnotationDescriptor extends org.vamsas.objects.core.RangeAnnotationDescriptor {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field nsPrefix
-     */
-    private java.lang.String nsPrefix;
-
-    /**
-     * Field nsURI
-     */
-    private java.lang.String nsURI;
-
-    /**
-     * Field xmlName
-     */
-    private java.lang.String xmlName;
-
-    /**
-     * Field identity
-     */
-    private org.exolab.castor.xml.XMLFieldDescriptor identity;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public AlignmentSequenceAnnotationDescriptor() 
-     {
-        super();
-        setExtendsWithoutFlatten(new org.vamsas.objects.core.RangeAnnotationDescriptor());
-        nsURI = "http://www.vamsas.org";
-        xmlName = "AlignmentSequenceAnnotation";
-        
-        //-- set grouping compositor
-        setCompositorAsSequence();
-        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
-        org.exolab.castor.mapping.FieldHandler             handler        = null;
-        org.exolab.castor.xml.FieldValidator               fieldValidator = null;
-        //-- initialize attribute descriptors
-        
-        //-- _graph
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_graph", "graph", org.exolab.castor.xml.NodeType.Attribute);
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;
-                if(!target.hasGraph())
-                    return null;
-                return (target.getGraph() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;
-                    // ignore null values for non optional primitives
-                    if (value == null) return;
-                    
-                    target.setGraph( ((java.lang.Boolean)value).booleanValue());
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return null;
-            }
-        };
-        desc.setHandler(handler);
-        desc.setRequired(true);
-        desc.setMultivalued(false);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _graph
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        fieldValidator.setMinOccurs(1);
-        { //-- local scope
-            BooleanValidator typeValidator = new BooleanValidator();
-            fieldValidator.setValidator(typeValidator);
-        }
-        desc.setValidator(fieldValidator);
-        //-- initialize element descriptors
-        
-        //-- _provenance
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;
-                return target.getProvenance();
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;
-                    target.setProvenance( (org.vamsas.objects.core.Provenance) value);
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return new org.vamsas.objects.core.Provenance();
-            }
-        };
-        desc.setHandler(handler);
-        desc.setNameSpaceURI("http://www.vamsas.org");
-        desc.setRequired(true);
-        desc.setMultivalued(false);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _provenance
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        fieldValidator.setMinOccurs(1);
-        { //-- local scope
-        }
-        desc.setValidator(fieldValidator);
-    } //-- org.vamsas.objects.core.AlignmentSequenceAnnotationDescriptor()
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * Method getAccessMode
-     * 
-     * 
-     * 
-     * @return AccessMode
-     */
-    public org.exolab.castor.mapping.AccessMode getAccessMode()
-    {
-        return null;
-    } //-- org.exolab.castor.mapping.AccessMode getAccessMode() 
-
-    /**
-     * Method getExtends
-     * 
-     * 
-     * 
-     * @return ClassDescriptor
-     */
-    public org.exolab.castor.mapping.ClassDescriptor getExtends()
-    {
-        return super.getExtends();
-    } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() 
-
-    /**
-     * Method getIdentity
-     * 
-     * 
-     * 
-     * @return FieldDescriptor
-     */
-    public org.exolab.castor.mapping.FieldDescriptor getIdentity()
-    {
-        if (identity == null)
-            return super.getIdentity();
-        return identity;
-    } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() 
-
-    /**
-     * Method getJavaClass
-     * 
-     * 
-     * 
-     * @return Class
-     */
-    public java.lang.Class getJavaClass()
-    {
-        return org.vamsas.objects.core.AlignmentSequenceAnnotation.class;
-    } //-- java.lang.Class getJavaClass() 
-
-    /**
-     * Method getNameSpacePrefix
-     * 
-     * 
-     * 
-     * @return String
-     */
-    public java.lang.String getNameSpacePrefix()
-    {
-        return nsPrefix;
-    } //-- java.lang.String getNameSpacePrefix() 
-
-    /**
-     * Method getNameSpaceURI
-     * 
-     * 
-     * 
-     * @return String
-     */
-    public java.lang.String getNameSpaceURI()
-    {
-        return nsURI;
-    } //-- java.lang.String getNameSpaceURI() 
-
-    /**
-     * Method getValidator
-     * 
-     * 
-     * 
-     * @return TypeValidator
-     */
-    public org.exolab.castor.xml.TypeValidator getValidator()
-    {
-        return this;
-    } //-- org.exolab.castor.xml.TypeValidator getValidator() 
-
-    /**
-     * Method getXMLName
-     * 
-     * 
-     * 
-     * @return String
-     */
-    public java.lang.String getXMLName()
-    {
-        return xmlName;
-    } //-- java.lang.String getXMLName() 
-
-}
+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package org.vamsas.objects.core;
+
+  //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.mapping.AccessMode;
+import org.exolab.castor.xml.TypeValidator;
+import org.exolab.castor.xml.XMLFieldDescriptor;
+import org.exolab.castor.xml.validators.*;
+
+/**
+ * Class AlignmentSequenceAnnotationDescriptor.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class AlignmentSequenceAnnotationDescriptor extends org.vamsas.objects.core.RangeAnnotationDescriptor {
+
+
+      //--------------------------/
+     //- Class/Member Variables -/
+    //--------------------------/
+
+    /**
+     * Field nsPrefix
+     */
+    private java.lang.String nsPrefix;
+
+    /**
+     * Field nsURI
+     */
+    private java.lang.String nsURI;
+
+    /**
+     * Field xmlName
+     */
+    private java.lang.String xmlName;
+
+    /**
+     * Field identity
+     */
+    private org.exolab.castor.xml.XMLFieldDescriptor identity;
+
+
+      //----------------/
+     //- Constructors -/
+    //----------------/
+
+    public AlignmentSequenceAnnotationDescriptor() 
+     {
+        super();
+        setExtendsWithoutFlatten(new org.vamsas.objects.core.RangeAnnotationDescriptor());
+        nsURI = "http://www.vamsas.org";
+        xmlName = "AlignmentSequenceAnnotation";
+        
+        //-- set grouping compositor
+        setCompositorAsSequence();
+        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
+        org.exolab.castor.mapping.FieldHandler             handler        = null;
+        org.exolab.castor.xml.FieldValidator               fieldValidator = null;
+        //-- initialize attribute descriptors
+        
+        //-- _graph
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_graph", "graph", org.exolab.castor.xml.NodeType.Attribute);
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {
+            public java.lang.Object getValue( java.lang.Object object ) 
+                throws IllegalStateException
+            {
+                AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;
+                if(!target.hasGraph())
+                    return null;
+                return (target.getGraph() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
+            }
+            public void setValue( java.lang.Object object, java.lang.Object value) 
+                throws IllegalStateException, IllegalArgumentException
+            {
+                try {
+                    AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;
+                    // ignore null values for non optional primitives
+                    if (value == null) return;
+                    
+                    target.setGraph( ((java.lang.Boolean)value).booleanValue());
+                }
+                catch (java.lang.Exception ex) {
+                    throw new IllegalStateException(ex.toString());
+                }
+            }
+            public java.lang.Object newInstance( java.lang.Object parent ) {
+                return null;
+            }
+        };
+        desc.setHandler(handler);
+        desc.setRequired(true);
+        desc.setMultivalued(false);
+        addFieldDescriptor(desc);
+        
+        //-- validation code for: _graph
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();
+        fieldValidator.setMinOccurs(1);
+        { //-- local scope
+            BooleanValidator typeValidator = new BooleanValidator();
+            fieldValidator.setValidator(typeValidator);
+        }
+        desc.setValidator(fieldValidator);
+        //-- initialize element descriptors
+        
+        //-- _provenance
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {
+            public java.lang.Object getValue( java.lang.Object object ) 
+                throws IllegalStateException
+            {
+                AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;
+                return target.getProvenance();
+            }
+            public void setValue( java.lang.Object object, java.lang.Object value) 
+                throws IllegalStateException, IllegalArgumentException
+            {
+                try {
+                    AlignmentSequenceAnnotation target = (AlignmentSequenceAnnotation) object;
+                    target.setProvenance( (org.vamsas.objects.core.Provenance) value);
+                }
+                catch (java.lang.Exception ex) {
+                    throw new IllegalStateException(ex.toString());
+                }
+            }
+            public java.lang.Object newInstance( java.lang.Object parent ) {
+                return new org.vamsas.objects.core.Provenance();
+            }
+        };
+        desc.setHandler(handler);
+        desc.setNameSpaceURI("http://www.vamsas.org");
+        desc.setRequired(true);
+        desc.setMultivalued(false);
+        addFieldDescriptor(desc);
+        
+        //-- validation code for: _provenance
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();
+        fieldValidator.setMinOccurs(1);
+        { //-- local scope
+        }
+        desc.setValidator(fieldValidator);
+    } //-- org.vamsas.objects.core.AlignmentSequenceAnnotationDescriptor()
+
+
+      //-----------/
+     //- Methods -/
+    //-----------/
+
+    /**
+     * Method getAccessMode
+     * 
+     * 
+     * 
+     * @return AccessMode
+     */
+    public org.exolab.castor.mapping.AccessMode getAccessMode()
+    {
+        return null;
+    } //-- org.exolab.castor.mapping.AccessMode getAccessMode() 
+
+    /**
+     * Method getExtends
+     * 
+     * 
+     * 
+     * @return ClassDescriptor
+     */
+    public org.exolab.castor.mapping.ClassDescriptor getExtends()
+    {
+        return super.getExtends();
+    } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() 
+
+    /**
+     * Method getIdentity
+     * 
+     * 
+     * 
+     * @return FieldDescriptor
+     */
+    public org.exolab.castor.mapping.FieldDescriptor getIdentity()
+    {
+        if (identity == null)
+            return super.getIdentity();
+        return identity;
+    } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() 
+
+    /**
+     * Method getJavaClass
+     * 
+     * 
+     * 
+     * @return Class
+     */
+    public java.lang.Class getJavaClass()
+    {
+        return org.vamsas.objects.core.AlignmentSequenceAnnotation.class;
+    } //-- java.lang.Class getJavaClass() 
+
+    /**
+     * Method getNameSpacePrefix
+     * 
+     * 
+     * 
+     * @return String
+     */
+    public java.lang.String getNameSpacePrefix()
+    {
+        return nsPrefix;
+    } //-- java.lang.String getNameSpacePrefix() 
+
+    /**
+     * Method getNameSpaceURI
+     * 
+     * 
+     * 
+     * @return String
+     */
+    public java.lang.String getNameSpaceURI()
+    {
+        return nsURI;
+    } //-- java.lang.String getNameSpaceURI() 
+
+    /**
+     * Method getValidator
+     * 
+     * 
+     * 
+     * @return TypeValidator
+     */
+    public org.exolab.castor.xml.TypeValidator getValidator()
+    {
+        return this;
+    } //-- org.exolab.castor.xml.TypeValidator getValidator() 
+
+    /**
+     * Method getXMLName
+     * 
+     * 
+     * 
+     * @return String
+     */
+    public java.lang.String getXMLName()
+    {
+        return xmlName;
+    } //-- java.lang.String getXMLName() 
+
+}