X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Forg%2Fvamsas%2Fobjects%2Fcore%2FAlignmentSequenceDescriptor.java;h=afbe5cd18e564c28e8ef9ef85769629e792e68ab;hb=127eed38a79f4e1b56457a3cd5c5de12c9c7d4a2;hp=e219b2b08890951ed00e009d8ba77754b2c3e600;hpb=b0e8ba054e5c3d3cd256f78d3a7310e6e263630e;p=vamsas.git

diff --git a/src/org/vamsas/objects/core/AlignmentSequenceDescriptor.java b/src/org/vamsas/objects/core/AlignmentSequenceDescriptor.java
index e219b2b..afbe5cd 100644
--- a/src/org/vamsas/objects/core/AlignmentSequenceDescriptor.java
+++ b/src/org/vamsas/objects/core/AlignmentSequenceDescriptor.java
@@ -59,6 +59,9 @@ public class AlignmentSequenceDescriptor extends org.vamsas.objects.core.Sequenc
         setExtendsWithoutFlatten(new org.vamsas.objects.core.SequenceTypeDescriptor());
         nsURI = "http://www.vamsas.org";
         xmlName = "alignmentSequence";
+        
+        //-- set grouping compositor
+        setCompositorAsSequence();
         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
         org.exolab.castor.mapping.FieldHandler             handler        = null;
         org.exolab.castor.xml.FieldValidator               fieldValidator = null;
@@ -136,6 +139,41 @@ public class AlignmentSequenceDescriptor extends org.vamsas.objects.core.Sequenc
         desc.setValidator(fieldValidator);
         //-- initialize element descriptors
         
+        //-- _alignmentSequenceAnnotationList
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentSequenceAnnotation.class, "_alignmentSequenceAnnotationList", "AlignmentSequenceAnnotation", org.exolab.castor.xml.NodeType.Element);
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {
+            public java.lang.Object getValue( java.lang.Object object ) 
+                throws IllegalStateException
+            {
+                AlignmentSequence target = (AlignmentSequence) object;
+                return target.getAlignmentSequenceAnnotation();
+            }
+            public void setValue( java.lang.Object object, java.lang.Object value) 
+                throws IllegalStateException, IllegalArgumentException
+            {
+                try {
+                    AlignmentSequence target = (AlignmentSequence) object;
+                    target.addAlignmentSequenceAnnotation( (org.vamsas.objects.core.AlignmentSequenceAnnotation) value);
+                }
+                catch (java.lang.Exception ex) {
+                    throw new IllegalStateException(ex.toString());
+                }
+            }
+            public java.lang.Object newInstance( java.lang.Object parent ) {
+                return new org.vamsas.objects.core.AlignmentSequenceAnnotation();
+            }
+        };
+        desc.setHandler(handler);
+        desc.setNameSpaceURI("http://www.vamsas.org");
+        desc.setMultivalued(true);
+        addFieldDescriptor(desc);
+        
+        //-- validation code for: _alignmentSequenceAnnotationList
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();
+        fieldValidator.setMinOccurs(0);
+        { //-- local scope
+        }
+        desc.setValidator(fieldValidator);
     } //-- org.vamsas.objects.core.AlignmentSequenceDescriptor()