X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Forg%2Fvamsas%2Fobjects%2Fcore%2FSeg.java;h=5e36703344f511d77b536991e00c1e25529ab384;hb=e15b38a5b95e0aa5b11707728abb539c073fe27c;hp=c9de39fbc3d212b224c78f4ae68083d4940d54ec;hpb=127eed38a79f4e1b56457a3cd5c5de12c9c7d4a2;p=vamsas.git
diff --git a/src/org/vamsas/objects/core/Seg.java b/src/org/vamsas/objects/core/Seg.java
index c9de39f..5e36703 100644
--- a/src/org/vamsas/objects/core/Seg.java
+++ b/src/org/vamsas/objects/core/Seg.java
@@ -1,332 +1,331 @@
-/*
- * This class was automatically generated with
- * Castor 0.9.9M2, using an XML
- * Schema.
- * $Id$
- */
-
-package org.vamsas.objects.core;
-
- //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
-
-/**
- * a region from start to end, with flag for
- * inclusivity of terminii
- *
- *
- * @version $Revision$ $Date$
- */
-public class Seg extends org.vamsas.client.Vobject
-implements java.io.Serializable
-{
-
-
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
-
- /**
- * Field _start
- */
- private int _start;
-
- /**
- * keeps track of state for field: _start
- */
- private boolean _has_start;
-
- /**
- * Field _end
- */
- private int _end;
-
- /**
- * keeps track of state for field: _end
- */
- private boolean _has_end;
-
- /**
- * when false, a consecutive range like
- * 'start=1, end=2' means the region lying
- * after position 1 and before position 2
- *
- */
- private boolean _inclusive;
-
- /**
- * keeps track of state for field: _inclusive
- */
- private boolean _has_inclusive;
-
-
- //----------------/
- //- Constructors -/
- //----------------/
-
- public Seg()
- {
- super();
- } //-- org.vamsas.objects.core.Seg()
-
-
- //-----------/
- //- Methods -/
- //-----------/
-
- /**
- * Method deleteEnd
- *
- */
- public void deleteEnd()
- {
- this._has_end= false;
- } //-- void deleteEnd()
-
- /**
- * Method deleteInclusive
- *
- */
- public void deleteInclusive()
- {
- this._has_inclusive= false;
- } //-- void deleteInclusive()
-
- /**
- * Method deleteStart
- *
- */
- public void deleteStart()
- {
- this._has_start= false;
- } //-- void deleteStart()
-
- /**
- * Note: hashCode() has not been overriden
- *
- * @param obj
- * @return boolean
- */
- public boolean equals(java.lang.Object obj)
- {
- if ( this == obj )
- return true;
-
- if (super.equals(obj)==false)
- return false;
-
- if (obj instanceof Seg) {
-
- Seg temp = (Seg)obj;
- if (this._start != temp._start)
- return false;
- if (this._has_start != temp._has_start)
- return false;
- if (this._end != temp._end)
- return false;
- if (this._has_end != temp._has_end)
- return false;
- if (this._inclusive != temp._inclusive)
- return false;
- if (this._has_inclusive != temp._has_inclusive)
- return false;
- return true;
- }
- return false;
- } //-- boolean equals(java.lang.Object)
-
- /**
- * Returns the value of field 'end'.
- *
- * @return int
- * @return the value of field 'end'.
- */
- public int getEnd()
- {
- return this._end;
- } //-- int getEnd()
-
- /**
- * Returns the value of field 'inclusive'. The field
- * 'inclusive' has the following description: when false, a
- * consecutive range like
- * 'start=1, end=2' means the region lying
- * after position 1 and before position 2
- *
- *
- * @return boolean
- * @return the value of field 'inclusive'.
- */
- public boolean getInclusive()
- {
- return this._inclusive;
- } //-- boolean getInclusive()
-
- /**
- * Returns the value of field 'start'.
- *
- * @return int
- * @return the value of field 'start'.
- */
- public int getStart()
- {
- return this._start;
- } //-- int getStart()
-
- /**
- * Method hasEnd
- *
- *
- *
- * @return boolean
- */
- public boolean hasEnd()
- {
- return this._has_end;
- } //-- boolean hasEnd()
-
- /**
- * Method hasInclusive
- *
- *
- *
- * @return boolean
- */
- public boolean hasInclusive()
- {
- return this._has_inclusive;
- } //-- boolean hasInclusive()
-
- /**
- * Method hasStart
- *
- *
- *
- * @return boolean
- */
- public boolean hasStart()
- {
- return this._has_start;
- } //-- boolean hasStart()
-
- /**
- * Method isValid
- *
- *
- *
- * @return boolean
- */
- public boolean isValid()
- {
- try {
- validate();
- }
- catch (org.exolab.castor.xml.ValidationException vex) {
- return false;
- }
- return true;
- } //-- boolean isValid()
-
- /**
- * Method marshal
- *
- *
- *
- * @param out
- */
- public void marshal(java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
-
- Marshaller.marshal(this, out);
- } //-- void marshal(java.io.Writer)
-
- /**
- * Method marshal
- *
- *
- *
- * @param handler
- */
- public void marshal(org.xml.sax.ContentHandler handler)
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
-
- Marshaller.marshal(this, handler);
- } //-- void marshal(org.xml.sax.ContentHandler)
-
- /**
- * Sets the value of field 'end'.
- *
- * @param end the value of field 'end'.
- */
- public void setEnd(int end)
- {
- this._end = end;
- this._has_end = true;
- } //-- void setEnd(int)
-
- /**
- * Sets the value of field 'inclusive'. The field 'inclusive'
- * has the following description: when false, a consecutive
- * range like
- * 'start=1, end=2' means the region lying
- * after position 1 and before position 2
- *
- *
- * @param inclusive the value of field 'inclusive'.
- */
- public void setInclusive(boolean inclusive)
- {
- this._inclusive = inclusive;
- this._has_inclusive = true;
- } //-- void setInclusive(boolean)
-
- /**
- * Sets the value of field 'start'.
- *
- * @param start the value of field 'start'.
- */
- public void setStart(int start)
- {
- this._start = start;
- this._has_start = true;
- } //-- void setStart(int)
-
- /**
- * Method unmarshal
- *
- *
- *
- * @param reader
- * @return Seg
- */
- public static org.vamsas.objects.core.Seg unmarshal(java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
- return (org.vamsas.objects.core.Seg) Unmarshaller.unmarshal(org.vamsas.objects.core.Seg.class, reader);
- } //-- org.vamsas.objects.core.Seg unmarshal(java.io.Reader)
-
- /**
- * Method validate
- *
- */
- public void validate()
- throws org.exolab.castor.xml.ValidationException
- {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
- } //-- void validate()
-
-}
+/*
+ * This class was automatically generated with
+ * Castor 0.9.9M2, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package org.vamsas.objects.core;
+
+ //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import java.io.IOException;
+import java.io.Reader;
+import java.io.Serializable;
+import java.io.Writer;
+import org.exolab.castor.xml.MarshalException;
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+import org.exolab.castor.xml.ValidationException;
+import org.xml.sax.ContentHandler;
+
+/**
+ * a region from start to end, with flag for inclusivity of
+ * terminii
+ *
+ * @version $Revision$ $Date$
+ */
+public class Seg extends org.vamsas.client.Vobject
+implements java.io.Serializable
+{
+
+
+ //--------------------------/
+ //- Class/Member Variables -/
+ //--------------------------/
+
+ /**
+ * Field _start
+ */
+ private int _start;
+
+ /**
+ * keeps track of state for field: _start
+ */
+ private boolean _has_start;
+
+ /**
+ * Field _end
+ */
+ private int _end;
+
+ /**
+ * keeps track of state for field: _end
+ */
+ private boolean _has_end;
+
+ /**
+ * when false, a consecutive range like 'start=1, end=2'
+ * means the region lying after position 1 and before position
+ * 2
+ *
+ */
+ private boolean _inclusive;
+
+ /**
+ * keeps track of state for field: _inclusive
+ */
+ private boolean _has_inclusive;
+
+
+ //----------------/
+ //- Constructors -/
+ //----------------/
+
+ public Seg()
+ {
+ super();
+ } //-- org.vamsas.objects.core.Seg()
+
+
+ //-----------/
+ //- Methods -/
+ //-----------/
+
+ /**
+ * Method deleteEnd
+ *
+ */
+ public void deleteEnd()
+ {
+ this._has_end= false;
+ } //-- void deleteEnd()
+
+ /**
+ * Method deleteInclusive
+ *
+ */
+ public void deleteInclusive()
+ {
+ this._has_inclusive= false;
+ } //-- void deleteInclusive()
+
+ /**
+ * Method deleteStart
+ *
+ */
+ public void deleteStart()
+ {
+ this._has_start= false;
+ } //-- void deleteStart()
+
+ /**
+ * Note: hashCode() has not been overriden
+ *
+ * @param obj
+ * @return boolean
+ */
+ public boolean equals(java.lang.Object obj)
+ {
+ if ( this == obj )
+ return true;
+
+ if (super.equals(obj)==false)
+ return false;
+
+ if (obj instanceof Seg) {
+
+ Seg temp = (Seg)obj;
+ if (this._start != temp._start)
+ return false;
+ if (this._has_start != temp._has_start)
+ return false;
+ if (this._end != temp._end)
+ return false;
+ if (this._has_end != temp._has_end)
+ return false;
+ if (this._inclusive != temp._inclusive)
+ return false;
+ if (this._has_inclusive != temp._has_inclusive)
+ return false;
+ return true;
+ }
+ return false;
+ } //-- boolean equals(java.lang.Object)
+
+ /**
+ * Returns the value of field 'end'.
+ *
+ * @return int
+ * @return the value of field 'end'.
+ */
+ public int getEnd()
+ {
+ return this._end;
+ } //-- int getEnd()
+
+ /**
+ * Returns the value of field 'inclusive'. The field
+ * 'inclusive' has the following description: when false, a
+ * consecutive range like 'start=1, end=2'
+ * means the region lying after position 1 and before position
+ * 2
+ *
+ *
+ * @return boolean
+ * @return the value of field 'inclusive'.
+ */
+ public boolean getInclusive()
+ {
+ return this._inclusive;
+ } //-- boolean getInclusive()
+
+ /**
+ * Returns the value of field 'start'.
+ *
+ * @return int
+ * @return the value of field 'start'.
+ */
+ public int getStart()
+ {
+ return this._start;
+ } //-- int getStart()
+
+ /**
+ * Method hasEnd
+ *
+ *
+ *
+ * @return boolean
+ */
+ public boolean hasEnd()
+ {
+ return this._has_end;
+ } //-- boolean hasEnd()
+
+ /**
+ * Method hasInclusive
+ *
+ *
+ *
+ * @return boolean
+ */
+ public boolean hasInclusive()
+ {
+ return this._has_inclusive;
+ } //-- boolean hasInclusive()
+
+ /**
+ * Method hasStart
+ *
+ *
+ *
+ * @return boolean
+ */
+ public boolean hasStart()
+ {
+ return this._has_start;
+ } //-- boolean hasStart()
+
+ /**
+ * Method isValid
+ *
+ *
+ *
+ * @return boolean
+ */
+ public boolean isValid()
+ {
+ try {
+ validate();
+ }
+ catch (org.exolab.castor.xml.ValidationException vex) {
+ return false;
+ }
+ return true;
+ } //-- boolean isValid()
+
+ /**
+ * Method marshal
+ *
+ *
+ *
+ * @param out
+ */
+ public void marshal(java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+ {
+
+ Marshaller.marshal(this, out);
+ } //-- void marshal(java.io.Writer)
+
+ /**
+ * Method marshal
+ *
+ *
+ *
+ * @param handler
+ */
+ public void marshal(org.xml.sax.ContentHandler handler)
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+ {
+
+ Marshaller.marshal(this, handler);
+ } //-- void marshal(org.xml.sax.ContentHandler)
+
+ /**
+ * Sets the value of field 'end'.
+ *
+ * @param end the value of field 'end'.
+ */
+ public void setEnd(int end)
+ {
+ this._end = end;
+ this._has_end = true;
+ } //-- void setEnd(int)
+
+ /**
+ * Sets the value of field 'inclusive'. The field 'inclusive'
+ * has the following description: when false, a consecutive
+ * range like 'start=1, end=2'
+ * means the region lying after position 1 and before position
+ * 2
+ *
+ *
+ * @param inclusive the value of field 'inclusive'.
+ */
+ public void setInclusive(boolean inclusive)
+ {
+ this._inclusive = inclusive;
+ this._has_inclusive = true;
+ } //-- void setInclusive(boolean)
+
+ /**
+ * Sets the value of field 'start'.
+ *
+ * @param start the value of field 'start'.
+ */
+ public void setStart(int start)
+ {
+ this._start = start;
+ this._has_start = true;
+ } //-- void setStart(int)
+
+ /**
+ * Method unmarshal
+ *
+ *
+ *
+ * @param reader
+ * @return Seg
+ */
+ public static org.vamsas.objects.core.Seg unmarshal(java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+ {
+ return (org.vamsas.objects.core.Seg) Unmarshaller.unmarshal(org.vamsas.objects.core.Seg.class, reader);
+ } //-- org.vamsas.objects.core.Seg unmarshal(java.io.Reader)
+
+ /**
+ * Method validate
+ *
+ */
+ public void validate()
+ throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ } //-- void validate()
+
+}