X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Forg%2Fvamsas%2Ftest%2Fsimpleclient%2FArchiveReader.java;h=d7959b4e2201b26d33401be295de808f0f6f8d4f;hb=7700d838b129db99edacb208b3153546795a33c7;hp=5f7fd6a1536c8ef1d947c89387d0383abbf13d22;hpb=3e39f1b6e6ce46765954fc678b6c87c8c8f0ba1b;p=vamsas.git

diff --git a/src/org/vamsas/test/simpleclient/ArchiveReader.java b/src/org/vamsas/test/simpleclient/ArchiveReader.java
index 5f7fd6a..d7959b4 100644
--- a/src/org/vamsas/test/simpleclient/ArchiveReader.java
+++ b/src/org/vamsas/test/simpleclient/ArchiveReader.java
@@ -10,6 +10,10 @@ import org.vamsas.objects.core.VAMSAS;
 import org.vamsas.objects.core.VamsasDocument;
 
 public class ArchiveReader {
+  /**
+   * tests VamsasArchiveReader archive reader on a vamsas jar file
+   * @param args
+   */
   public static void main(String args[]) {
     
     try {
@@ -19,7 +23,7 @@ public class ArchiveReader {
       if (var.isValid()) {
         InputStreamReader vdoc = new InputStreamReader(var.getVamsasDocumentStream());
         VamsasDocument doc = VamsasDocument.unmarshal(vdoc);
-        if (ArchiveReports.reportDocument(doc, var)) {
+        if (ArchiveReports.reportDocument(doc, var, true, System.out)) {
           roots = doc.getVAMSAS();
         }
       } else {
@@ -37,7 +41,7 @@ public class ArchiveReader {
           }
         }
       }
-      if (!ArchiveReports.rootReport(roots))
+      if (!ArchiveReports.rootReport(roots, true, System.out))
         System.err.print(args[0]+" is not a valid vamsas archive.");
     } catch (Exception e) {
       e.printStackTrace(System.err);