X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fuk%2Fac%2Febi%2Fpicr%2Fmodel%2FUPEntry.java;h=c94bf152c910d92802e06e7188732c75a5df65a6;hb=37cf4fec843890d780d400a50439cc16cbc1c98a;hp=db20b001b5cbe0e7a96dfb3cab4bac58ba96ee54;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git
diff --git a/src/uk/ac/ebi/picr/model/UPEntry.java b/src/uk/ac/ebi/picr/model/UPEntry.java
index db20b00..c94bf15 100644
--- a/src/uk/ac/ebi/picr/model/UPEntry.java
+++ b/src/uk/ac/ebi/picr/model/UPEntry.java
@@ -1,290 +1,301 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
- */
-package uk.ac.ebi.picr.model;
-
-public class UPEntry implements java.io.Serializable
-{
- private java.lang.String CRC64;
-
- private java.lang.String UPI;
-
- private uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences;
-
- private uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences;
-
- private java.lang.String sequence;
-
- private java.util.Calendar timestamp;
-
- public UPEntry()
- {
- }
-
- public UPEntry(java.lang.String CRC64, java.lang.String UPI,
- uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences,
- uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences,
- java.lang.String sequence, java.util.Calendar timestamp)
- {
- this.CRC64 = CRC64;
- this.UPI = UPI;
- this.identicalCrossReferences = identicalCrossReferences;
- this.logicalCrossReferences = logicalCrossReferences;
- this.sequence = sequence;
- this.timestamp = timestamp;
- }
-
- /**
- * Gets the CRC64 value for this UPEntry.
- *
- * @return CRC64
- */
- public java.lang.String getCRC64()
- {
- return CRC64;
- }
-
- /**
- * Sets the CRC64 value for this UPEntry.
- *
- * @param CRC64
- */
- public void setCRC64(java.lang.String CRC64)
- {
- this.CRC64 = CRC64;
- }
-
- /**
- * Gets the UPI value for this UPEntry.
- *
- * @return UPI
- */
- public java.lang.String getUPI()
- {
- return UPI;
- }
-
- /**
- * Sets the UPI value for this UPEntry.
- *
- * @param UPI
- */
- public void setUPI(java.lang.String UPI)
- {
- this.UPI = UPI;
- }
-
- /**
- * Gets the identicalCrossReferences value for this UPEntry.
- *
- * @return identicalCrossReferences
- */
- public uk.ac.ebi.picr.model.CrossReference[] getIdenticalCrossReferences()
- {
- return identicalCrossReferences;
- }
-
- /**
- * Sets the identicalCrossReferences value for this UPEntry.
- *
- * @param identicalCrossReferences
- */
- public void setIdenticalCrossReferences(
- uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences)
- {
- this.identicalCrossReferences = identicalCrossReferences;
- }
-
- public uk.ac.ebi.picr.model.CrossReference getIdenticalCrossReferences(
- int i)
- {
- return this.identicalCrossReferences[i];
- }
-
- public void setIdenticalCrossReferences(int i,
- uk.ac.ebi.picr.model.CrossReference _value)
- {
- this.identicalCrossReferences[i] = _value;
- }
-
- /**
- * Gets the logicalCrossReferences value for this UPEntry.
- *
- * @return logicalCrossReferences
- */
- public uk.ac.ebi.picr.model.CrossReference[] getLogicalCrossReferences()
- {
- return logicalCrossReferences;
- }
-
- /**
- * Sets the logicalCrossReferences value for this UPEntry.
- *
- * @param logicalCrossReferences
- */
- public void setLogicalCrossReferences(
- uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences)
- {
- this.logicalCrossReferences = logicalCrossReferences;
- }
-
- public uk.ac.ebi.picr.model.CrossReference getLogicalCrossReferences(int i)
- {
- return this.logicalCrossReferences[i];
- }
-
- public void setLogicalCrossReferences(int i,
- uk.ac.ebi.picr.model.CrossReference _value)
- {
- this.logicalCrossReferences[i] = _value;
- }
-
- /**
- * Gets the sequence value for this UPEntry.
- *
- * @return sequence
- */
- public java.lang.String getSequence()
- {
- return sequence;
- }
-
- /**
- * Sets the sequence value for this UPEntry.
- *
- * @param sequence
- */
- public void setSequence(java.lang.String sequence)
- {
- this.sequence = sequence;
- }
-
- /**
- * Gets the timestamp value for this UPEntry.
- *
- * @return timestamp
- */
- public java.util.Calendar getTimestamp()
- {
- return timestamp;
- }
-
- /**
- * Sets the timestamp value for this UPEntry.
- *
- * @param timestamp
- */
- public void setTimestamp(java.util.Calendar timestamp)
- {
- this.timestamp = timestamp;
- }
-
- private java.lang.Object __equalsCalc = null;
-
- public synchronized boolean equals(java.lang.Object obj)
- {
- if (!(obj instanceof UPEntry))
- return false;
- UPEntry other = (UPEntry) obj;
- if (obj == null)
- return false;
- if (this == obj)
- return true;
- if (__equalsCalc != null)
- {
- return (__equalsCalc == obj);
- }
- __equalsCalc = obj;
- boolean _equals;
- _equals = true
- && ((this.CRC64 == null && other.getCRC64() == null) || (this.CRC64 != null && this.CRC64
- .equals(other.getCRC64())))
- && ((this.UPI == null && other.getUPI() == null) || (this.UPI != null && this.UPI
- .equals(other.getUPI())))
- && ((this.identicalCrossReferences == null && other
- .getIdenticalCrossReferences() == null) || (this.identicalCrossReferences != null && java.util.Arrays
- .equals(this.identicalCrossReferences, other
- .getIdenticalCrossReferences())))
- && ((this.logicalCrossReferences == null && other
- .getLogicalCrossReferences() == null) || (this.logicalCrossReferences != null && java.util.Arrays
- .equals(this.logicalCrossReferences, other
- .getLogicalCrossReferences())))
- && ((this.sequence == null && other.getSequence() == null) || (this.sequence != null && this.sequence
- .equals(other.getSequence())))
- && ((this.timestamp == null && other.getTimestamp() == null) || (this.timestamp != null && this.timestamp
- .equals(other.getTimestamp())));
- __equalsCalc = null;
- return _equals;
- }
-
- private boolean __hashCodeCalc = false;
-
- public synchronized int hashCode()
- {
- if (__hashCodeCalc)
- {
- return 0;
- }
- __hashCodeCalc = true;
- int _hashCode = 1;
- if (getCRC64() != null)
- {
- _hashCode += getCRC64().hashCode();
- }
- if (getUPI() != null)
- {
- _hashCode += getUPI().hashCode();
- }
- if (getIdenticalCrossReferences() != null)
- {
- for (int i = 0; i < java.lang.reflect.Array
- .getLength(getIdenticalCrossReferences()); i++)
- {
- java.lang.Object obj = java.lang.reflect.Array.get(
- getIdenticalCrossReferences(), i);
- if (obj != null && !obj.getClass().isArray())
- {
- _hashCode += obj.hashCode();
- }
- }
- }
- if (getLogicalCrossReferences() != null)
- {
- for (int i = 0; i < java.lang.reflect.Array
- .getLength(getLogicalCrossReferences()); i++)
- {
- java.lang.Object obj = java.lang.reflect.Array.get(
- getLogicalCrossReferences(), i);
- if (obj != null && !obj.getClass().isArray())
- {
- _hashCode += obj.hashCode();
- }
- }
- }
- if (getSequence() != null)
- {
- _hashCode += getSequence().hashCode();
- }
- if (getTimestamp() != null)
- {
- _hashCode += getTimestamp().hashCode();
- }
- __hashCodeCalc = false;
- return _hashCode;
- }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package uk.ac.ebi.picr.model;
+
+public class UPEntry implements java.io.Serializable
+{
+ private java.lang.String CRC64;
+
+ private java.lang.String UPI;
+
+ private uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences;
+
+ private uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences;
+
+ private java.lang.String sequence;
+
+ private java.util.Calendar timestamp;
+
+ public UPEntry()
+ {
+ }
+
+ public UPEntry(java.lang.String CRC64, java.lang.String UPI,
+ uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences,
+ uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences,
+ java.lang.String sequence, java.util.Calendar timestamp)
+ {
+ this.CRC64 = CRC64;
+ this.UPI = UPI;
+ this.identicalCrossReferences = identicalCrossReferences;
+ this.logicalCrossReferences = logicalCrossReferences;
+ this.sequence = sequence;
+ this.timestamp = timestamp;
+ }
+
+ /**
+ * Gets the CRC64 value for this UPEntry.
+ *
+ * @return CRC64
+ */
+ public java.lang.String getCRC64()
+ {
+ return CRC64;
+ }
+
+ /**
+ * Sets the CRC64 value for this UPEntry.
+ *
+ * @param CRC64
+ */
+ public void setCRC64(java.lang.String CRC64)
+ {
+ this.CRC64 = CRC64;
+ }
+
+ /**
+ * Gets the UPI value for this UPEntry.
+ *
+ * @return UPI
+ */
+ public java.lang.String getUPI()
+ {
+ return UPI;
+ }
+
+ /**
+ * Sets the UPI value for this UPEntry.
+ *
+ * @param UPI
+ */
+ public void setUPI(java.lang.String UPI)
+ {
+ this.UPI = UPI;
+ }
+
+ /**
+ * Gets the identicalCrossReferences value for this UPEntry.
+ *
+ * @return identicalCrossReferences
+ */
+ public uk.ac.ebi.picr.model.CrossReference[] getIdenticalCrossReferences()
+ {
+ return identicalCrossReferences;
+ }
+
+ /**
+ * Sets the identicalCrossReferences value for this UPEntry.
+ *
+ * @param identicalCrossReferences
+ */
+ public void setIdenticalCrossReferences(
+ uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences)
+ {
+ this.identicalCrossReferences = identicalCrossReferences;
+ }
+
+ public uk.ac.ebi.picr.model.CrossReference getIdenticalCrossReferences(
+ int i)
+ {
+ return this.identicalCrossReferences[i];
+ }
+
+ public void setIdenticalCrossReferences(int i,
+ uk.ac.ebi.picr.model.CrossReference _value)
+ {
+ this.identicalCrossReferences[i] = _value;
+ }
+
+ /**
+ * Gets the logicalCrossReferences value for this UPEntry.
+ *
+ * @return logicalCrossReferences
+ */
+ public uk.ac.ebi.picr.model.CrossReference[] getLogicalCrossReferences()
+ {
+ return logicalCrossReferences;
+ }
+
+ /**
+ * Sets the logicalCrossReferences value for this UPEntry.
+ *
+ * @param logicalCrossReferences
+ */
+ public void setLogicalCrossReferences(
+ uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences)
+ {
+ this.logicalCrossReferences = logicalCrossReferences;
+ }
+
+ public uk.ac.ebi.picr.model.CrossReference getLogicalCrossReferences(int i)
+ {
+ return this.logicalCrossReferences[i];
+ }
+
+ public void setLogicalCrossReferences(int i,
+ uk.ac.ebi.picr.model.CrossReference _value)
+ {
+ this.logicalCrossReferences[i] = _value;
+ }
+
+ /**
+ * Gets the sequence value for this UPEntry.
+ *
+ * @return sequence
+ */
+ public java.lang.String getSequence()
+ {
+ return sequence;
+ }
+
+ /**
+ * Sets the sequence value for this UPEntry.
+ *
+ * @param sequence
+ */
+ public void setSequence(java.lang.String sequence)
+ {
+ this.sequence = sequence;
+ }
+
+ /**
+ * Gets the timestamp value for this UPEntry.
+ *
+ * @return timestamp
+ */
+ public java.util.Calendar getTimestamp()
+ {
+ return timestamp;
+ }
+
+ /**
+ * Sets the timestamp value for this UPEntry.
+ *
+ * @param timestamp
+ */
+ public void setTimestamp(java.util.Calendar timestamp)
+ {
+ this.timestamp = timestamp;
+ }
+
+ private java.lang.Object __equalsCalc = null;
+
+ @Override
+ public synchronized boolean equals(java.lang.Object obj)
+ {
+ if (obj == null)
+ {
+ return false;
+ }
+ if (!(obj instanceof UPEntry))
+ {
+ return false;
+ }
+ UPEntry other = (UPEntry) obj;
+ if (this == obj)
+ {
+ return true;
+ }
+ if (__equalsCalc != null)
+ {
+ return (__equalsCalc == obj);
+ }
+ __equalsCalc = obj;
+ boolean _equals;
+ _equals = true
+ && ((this.CRC64 == null && other.getCRC64() == null) || (this.CRC64 != null && this.CRC64
+ .equals(other.getCRC64())))
+ && ((this.UPI == null && other.getUPI() == null) || (this.UPI != null && this.UPI
+ .equals(other.getUPI())))
+ && ((this.identicalCrossReferences == null && other
+ .getIdenticalCrossReferences() == null) || (this.identicalCrossReferences != null && java.util.Arrays
+ .equals(this.identicalCrossReferences,
+ other.getIdenticalCrossReferences())))
+ && ((this.logicalCrossReferences == null && other
+ .getLogicalCrossReferences() == null) || (this.logicalCrossReferences != null && java.util.Arrays
+ .equals(this.logicalCrossReferences,
+ other.getLogicalCrossReferences())))
+ && ((this.sequence == null && other.getSequence() == null) || (this.sequence != null && this.sequence
+ .equals(other.getSequence())))
+ && ((this.timestamp == null && other.getTimestamp() == null) || (this.timestamp != null && this.timestamp
+ .equals(other.getTimestamp())));
+ __equalsCalc = null;
+ return _equals;
+ }
+
+ private boolean __hashCodeCalc = false;
+
+ @Override
+ public synchronized int hashCode()
+ {
+ if (__hashCodeCalc)
+ {
+ return 0;
+ }
+ __hashCodeCalc = true;
+ int _hashCode = 1;
+ if (getCRC64() != null)
+ {
+ _hashCode += getCRC64().hashCode();
+ }
+ if (getUPI() != null)
+ {
+ _hashCode += getUPI().hashCode();
+ }
+ if (getIdenticalCrossReferences() != null)
+ {
+ for (int i = 0; i < java.lang.reflect.Array
+ .getLength(getIdenticalCrossReferences()); i++)
+ {
+ java.lang.Object obj = java.lang.reflect.Array.get(
+ getIdenticalCrossReferences(), i);
+ if (obj != null && !obj.getClass().isArray())
+ {
+ _hashCode += obj.hashCode();
+ }
+ }
+ }
+ if (getLogicalCrossReferences() != null)
+ {
+ for (int i = 0; i < java.lang.reflect.Array
+ .getLength(getLogicalCrossReferences()); i++)
+ {
+ java.lang.Object obj = java.lang.reflect.Array.get(
+ getLogicalCrossReferences(), i);
+ if (obj != null && !obj.getClass().isArray())
+ {
+ _hashCode += obj.hashCode();
+ }
+ }
+ }
+ if (getSequence() != null)
+ {
+ _hashCode += getSequence().hashCode();
+ }
+ if (getTimestamp() != null)
+ {
+ _hashCode += getTimestamp().hashCode();
+ }
+ __hashCodeCalc = false;
+ return _hashCode;
+ }
+
+}