X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fuk%2Fac%2Febi%2Fpicr%2Fmodel%2FUPEntry.java;h=c94bf152c910d92802e06e7188732c75a5df65a6;hb=37de9310bec3501cbc6381e0c3dcb282fcaad812;hp=db20b001b5cbe0e7a96dfb3cab4bac58ba96ee54;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/uk/ac/ebi/picr/model/UPEntry.java b/src/uk/ac/ebi/picr/model/UPEntry.java
index db20b00..c94bf15 100644
--- a/src/uk/ac/ebi/picr/model/UPEntry.java
+++ b/src/uk/ac/ebi/picr/model/UPEntry.java
@@ -1,290 +1,301 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- */
-package uk.ac.ebi.picr.model;
-
-public class UPEntry implements java.io.Serializable
-{
-  private java.lang.String CRC64;
-
-  private java.lang.String UPI;
-
-  private uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences;
-
-  private uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences;
-
-  private java.lang.String sequence;
-
-  private java.util.Calendar timestamp;
-
-  public UPEntry()
-  {
-  }
-
-  public UPEntry(java.lang.String CRC64, java.lang.String UPI,
-          uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences,
-          uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences,
-          java.lang.String sequence, java.util.Calendar timestamp)
-  {
-    this.CRC64 = CRC64;
-    this.UPI = UPI;
-    this.identicalCrossReferences = identicalCrossReferences;
-    this.logicalCrossReferences = logicalCrossReferences;
-    this.sequence = sequence;
-    this.timestamp = timestamp;
-  }
-
-  /**
-   * Gets the CRC64 value for this UPEntry.
-   * 
-   * @return CRC64
-   */
-  public java.lang.String getCRC64()
-  {
-    return CRC64;
-  }
-
-  /**
-   * Sets the CRC64 value for this UPEntry.
-   * 
-   * @param CRC64
-   */
-  public void setCRC64(java.lang.String CRC64)
-  {
-    this.CRC64 = CRC64;
-  }
-
-  /**
-   * Gets the UPI value for this UPEntry.
-   * 
-   * @return UPI
-   */
-  public java.lang.String getUPI()
-  {
-    return UPI;
-  }
-
-  /**
-   * Sets the UPI value for this UPEntry.
-   * 
-   * @param UPI
-   */
-  public void setUPI(java.lang.String UPI)
-  {
-    this.UPI = UPI;
-  }
-
-  /**
-   * Gets the identicalCrossReferences value for this UPEntry.
-   * 
-   * @return identicalCrossReferences
-   */
-  public uk.ac.ebi.picr.model.CrossReference[] getIdenticalCrossReferences()
-  {
-    return identicalCrossReferences;
-  }
-
-  /**
-   * Sets the identicalCrossReferences value for this UPEntry.
-   * 
-   * @param identicalCrossReferences
-   */
-  public void setIdenticalCrossReferences(
-          uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences)
-  {
-    this.identicalCrossReferences = identicalCrossReferences;
-  }
-
-  public uk.ac.ebi.picr.model.CrossReference getIdenticalCrossReferences(
-          int i)
-  {
-    return this.identicalCrossReferences[i];
-  }
-
-  public void setIdenticalCrossReferences(int i,
-          uk.ac.ebi.picr.model.CrossReference _value)
-  {
-    this.identicalCrossReferences[i] = _value;
-  }
-
-  /**
-   * Gets the logicalCrossReferences value for this UPEntry.
-   * 
-   * @return logicalCrossReferences
-   */
-  public uk.ac.ebi.picr.model.CrossReference[] getLogicalCrossReferences()
-  {
-    return logicalCrossReferences;
-  }
-
-  /**
-   * Sets the logicalCrossReferences value for this UPEntry.
-   * 
-   * @param logicalCrossReferences
-   */
-  public void setLogicalCrossReferences(
-          uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences)
-  {
-    this.logicalCrossReferences = logicalCrossReferences;
-  }
-
-  public uk.ac.ebi.picr.model.CrossReference getLogicalCrossReferences(int i)
-  {
-    return this.logicalCrossReferences[i];
-  }
-
-  public void setLogicalCrossReferences(int i,
-          uk.ac.ebi.picr.model.CrossReference _value)
-  {
-    this.logicalCrossReferences[i] = _value;
-  }
-
-  /**
-   * Gets the sequence value for this UPEntry.
-   * 
-   * @return sequence
-   */
-  public java.lang.String getSequence()
-  {
-    return sequence;
-  }
-
-  /**
-   * Sets the sequence value for this UPEntry.
-   * 
-   * @param sequence
-   */
-  public void setSequence(java.lang.String sequence)
-  {
-    this.sequence = sequence;
-  }
-
-  /**
-   * Gets the timestamp value for this UPEntry.
-   * 
-   * @return timestamp
-   */
-  public java.util.Calendar getTimestamp()
-  {
-    return timestamp;
-  }
-
-  /**
-   * Sets the timestamp value for this UPEntry.
-   * 
-   * @param timestamp
-   */
-  public void setTimestamp(java.util.Calendar timestamp)
-  {
-    this.timestamp = timestamp;
-  }
-
-  private java.lang.Object __equalsCalc = null;
-
-  public synchronized boolean equals(java.lang.Object obj)
-  {
-    if (!(obj instanceof UPEntry))
-      return false;
-    UPEntry other = (UPEntry) obj;
-    if (obj == null)
-      return false;
-    if (this == obj)
-      return true;
-    if (__equalsCalc != null)
-    {
-      return (__equalsCalc == obj);
-    }
-    __equalsCalc = obj;
-    boolean _equals;
-    _equals = true
-            && ((this.CRC64 == null && other.getCRC64() == null) || (this.CRC64 != null && this.CRC64
-                    .equals(other.getCRC64())))
-            && ((this.UPI == null && other.getUPI() == null) || (this.UPI != null && this.UPI
-                    .equals(other.getUPI())))
-            && ((this.identicalCrossReferences == null && other
-                    .getIdenticalCrossReferences() == null) || (this.identicalCrossReferences != null && java.util.Arrays
-                    .equals(this.identicalCrossReferences, other
-                            .getIdenticalCrossReferences())))
-            && ((this.logicalCrossReferences == null && other
-                    .getLogicalCrossReferences() == null) || (this.logicalCrossReferences != null && java.util.Arrays
-                    .equals(this.logicalCrossReferences, other
-                            .getLogicalCrossReferences())))
-            && ((this.sequence == null && other.getSequence() == null) || (this.sequence != null && this.sequence
-                    .equals(other.getSequence())))
-            && ((this.timestamp == null && other.getTimestamp() == null) || (this.timestamp != null && this.timestamp
-                    .equals(other.getTimestamp())));
-    __equalsCalc = null;
-    return _equals;
-  }
-
-  private boolean __hashCodeCalc = false;
-
-  public synchronized int hashCode()
-  {
-    if (__hashCodeCalc)
-    {
-      return 0;
-    }
-    __hashCodeCalc = true;
-    int _hashCode = 1;
-    if (getCRC64() != null)
-    {
-      _hashCode += getCRC64().hashCode();
-    }
-    if (getUPI() != null)
-    {
-      _hashCode += getUPI().hashCode();
-    }
-    if (getIdenticalCrossReferences() != null)
-    {
-      for (int i = 0; i < java.lang.reflect.Array
-              .getLength(getIdenticalCrossReferences()); i++)
-      {
-        java.lang.Object obj = java.lang.reflect.Array.get(
-                getIdenticalCrossReferences(), i);
-        if (obj != null && !obj.getClass().isArray())
-        {
-          _hashCode += obj.hashCode();
-        }
-      }
-    }
-    if (getLogicalCrossReferences() != null)
-    {
-      for (int i = 0; i < java.lang.reflect.Array
-              .getLength(getLogicalCrossReferences()); i++)
-      {
-        java.lang.Object obj = java.lang.reflect.Array.get(
-                getLogicalCrossReferences(), i);
-        if (obj != null && !obj.getClass().isArray())
-        {
-          _hashCode += obj.hashCode();
-        }
-      }
-    }
-    if (getSequence() != null)
-    {
-      _hashCode += getSequence().hashCode();
-    }
-    if (getTimestamp() != null)
-    {
-      _hashCode += getTimestamp().hashCode();
-    }
-    __hashCodeCalc = false;
-    return _hashCode;
-  }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package uk.ac.ebi.picr.model;
+
+public class UPEntry implements java.io.Serializable
+{
+  private java.lang.String CRC64;
+
+  private java.lang.String UPI;
+
+  private uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences;
+
+  private uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences;
+
+  private java.lang.String sequence;
+
+  private java.util.Calendar timestamp;
+
+  public UPEntry()
+  {
+  }
+
+  public UPEntry(java.lang.String CRC64, java.lang.String UPI,
+          uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences,
+          uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences,
+          java.lang.String sequence, java.util.Calendar timestamp)
+  {
+    this.CRC64 = CRC64;
+    this.UPI = UPI;
+    this.identicalCrossReferences = identicalCrossReferences;
+    this.logicalCrossReferences = logicalCrossReferences;
+    this.sequence = sequence;
+    this.timestamp = timestamp;
+  }
+
+  /**
+   * Gets the CRC64 value for this UPEntry.
+   * 
+   * @return CRC64
+   */
+  public java.lang.String getCRC64()
+  {
+    return CRC64;
+  }
+
+  /**
+   * Sets the CRC64 value for this UPEntry.
+   * 
+   * @param CRC64
+   */
+  public void setCRC64(java.lang.String CRC64)
+  {
+    this.CRC64 = CRC64;
+  }
+
+  /**
+   * Gets the UPI value for this UPEntry.
+   * 
+   * @return UPI
+   */
+  public java.lang.String getUPI()
+  {
+    return UPI;
+  }
+
+  /**
+   * Sets the UPI value for this UPEntry.
+   * 
+   * @param UPI
+   */
+  public void setUPI(java.lang.String UPI)
+  {
+    this.UPI = UPI;
+  }
+
+  /**
+   * Gets the identicalCrossReferences value for this UPEntry.
+   * 
+   * @return identicalCrossReferences
+   */
+  public uk.ac.ebi.picr.model.CrossReference[] getIdenticalCrossReferences()
+  {
+    return identicalCrossReferences;
+  }
+
+  /**
+   * Sets the identicalCrossReferences value for this UPEntry.
+   * 
+   * @param identicalCrossReferences
+   */
+  public void setIdenticalCrossReferences(
+          uk.ac.ebi.picr.model.CrossReference[] identicalCrossReferences)
+  {
+    this.identicalCrossReferences = identicalCrossReferences;
+  }
+
+  public uk.ac.ebi.picr.model.CrossReference getIdenticalCrossReferences(
+          int i)
+  {
+    return this.identicalCrossReferences[i];
+  }
+
+  public void setIdenticalCrossReferences(int i,
+          uk.ac.ebi.picr.model.CrossReference _value)
+  {
+    this.identicalCrossReferences[i] = _value;
+  }
+
+  /**
+   * Gets the logicalCrossReferences value for this UPEntry.
+   * 
+   * @return logicalCrossReferences
+   */
+  public uk.ac.ebi.picr.model.CrossReference[] getLogicalCrossReferences()
+  {
+    return logicalCrossReferences;
+  }
+
+  /**
+   * Sets the logicalCrossReferences value for this UPEntry.
+   * 
+   * @param logicalCrossReferences
+   */
+  public void setLogicalCrossReferences(
+          uk.ac.ebi.picr.model.CrossReference[] logicalCrossReferences)
+  {
+    this.logicalCrossReferences = logicalCrossReferences;
+  }
+
+  public uk.ac.ebi.picr.model.CrossReference getLogicalCrossReferences(int i)
+  {
+    return this.logicalCrossReferences[i];
+  }
+
+  public void setLogicalCrossReferences(int i,
+          uk.ac.ebi.picr.model.CrossReference _value)
+  {
+    this.logicalCrossReferences[i] = _value;
+  }
+
+  /**
+   * Gets the sequence value for this UPEntry.
+   * 
+   * @return sequence
+   */
+  public java.lang.String getSequence()
+  {
+    return sequence;
+  }
+
+  /**
+   * Sets the sequence value for this UPEntry.
+   * 
+   * @param sequence
+   */
+  public void setSequence(java.lang.String sequence)
+  {
+    this.sequence = sequence;
+  }
+
+  /**
+   * Gets the timestamp value for this UPEntry.
+   * 
+   * @return timestamp
+   */
+  public java.util.Calendar getTimestamp()
+  {
+    return timestamp;
+  }
+
+  /**
+   * Sets the timestamp value for this UPEntry.
+   * 
+   * @param timestamp
+   */
+  public void setTimestamp(java.util.Calendar timestamp)
+  {
+    this.timestamp = timestamp;
+  }
+
+  private java.lang.Object __equalsCalc = null;
+
+  @Override
+  public synchronized boolean equals(java.lang.Object obj)
+  {
+    if (obj == null)
+    {
+      return false;
+    }
+    if (!(obj instanceof UPEntry))
+    {
+      return false;
+    }
+    UPEntry other = (UPEntry) obj;
+    if (this == obj)
+    {
+      return true;
+    }
+    if (__equalsCalc != null)
+    {
+      return (__equalsCalc == obj);
+    }
+    __equalsCalc = obj;
+    boolean _equals;
+    _equals = true
+            && ((this.CRC64 == null && other.getCRC64() == null) || (this.CRC64 != null && this.CRC64
+                    .equals(other.getCRC64())))
+            && ((this.UPI == null && other.getUPI() == null) || (this.UPI != null && this.UPI
+                    .equals(other.getUPI())))
+            && ((this.identicalCrossReferences == null && other
+                    .getIdenticalCrossReferences() == null) || (this.identicalCrossReferences != null && java.util.Arrays
+                    .equals(this.identicalCrossReferences,
+                            other.getIdenticalCrossReferences())))
+            && ((this.logicalCrossReferences == null && other
+                    .getLogicalCrossReferences() == null) || (this.logicalCrossReferences != null && java.util.Arrays
+                    .equals(this.logicalCrossReferences,
+                            other.getLogicalCrossReferences())))
+            && ((this.sequence == null && other.getSequence() == null) || (this.sequence != null && this.sequence
+                    .equals(other.getSequence())))
+            && ((this.timestamp == null && other.getTimestamp() == null) || (this.timestamp != null && this.timestamp
+                    .equals(other.getTimestamp())));
+    __equalsCalc = null;
+    return _equals;
+  }
+
+  private boolean __hashCodeCalc = false;
+
+  @Override
+  public synchronized int hashCode()
+  {
+    if (__hashCodeCalc)
+    {
+      return 0;
+    }
+    __hashCodeCalc = true;
+    int _hashCode = 1;
+    if (getCRC64() != null)
+    {
+      _hashCode += getCRC64().hashCode();
+    }
+    if (getUPI() != null)
+    {
+      _hashCode += getUPI().hashCode();
+    }
+    if (getIdenticalCrossReferences() != null)
+    {
+      for (int i = 0; i < java.lang.reflect.Array
+              .getLength(getIdenticalCrossReferences()); i++)
+      {
+        java.lang.Object obj = java.lang.reflect.Array.get(
+                getIdenticalCrossReferences(), i);
+        if (obj != null && !obj.getClass().isArray())
+        {
+          _hashCode += obj.hashCode();
+        }
+      }
+    }
+    if (getLogicalCrossReferences() != null)
+    {
+      for (int i = 0; i < java.lang.reflect.Array
+              .getLength(getLogicalCrossReferences()); i++)
+      {
+        java.lang.Object obj = java.lang.reflect.Array.get(
+                getLogicalCrossReferences(), i);
+        if (obj != null && !obj.getClass().isArray())
+        {
+          _hashCode += obj.hashCode();
+        }
+      }
+    }
+    if (getSequence() != null)
+    {
+      _hashCode += getSequence().hashCode();
+    }
+    if (getTimestamp() != null)
+    {
+      _hashCode += getTimestamp().hashCode();
+    }
+    __hashCodeCalc = false;
+    return _hashCode;
+  }
+
+}