X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fuk%2Fac%2Febi%2Fwww%2Fpicr%2FAccessionMappingService%2FAccessionMapperBindingStub.java;h=dcdef37294231afc568606a42911e621ef0bb5d1;hb=59d682209891099d46b960509907c79e3fb276fe;hp=e37d77f4c01a7a86fb2fde547b03384479f4467a;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git
diff --git a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
index e37d77f..dcdef37 100644
--- a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
+++ b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
@@ -1,400 +1,397 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
- */
-package uk.ac.ebi.www.picr.AccessionMappingService;
-
-public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
- implements
- uk.ac.ebi.www.picr.AccessionMappingService.AccessionMapperInterface
-{
- private java.util.Vector cachedSerClasses = new java.util.Vector();
-
- private java.util.Vector cachedSerQNames = new java.util.Vector();
-
- private java.util.Vector cachedSerFactories = new java.util.Vector();
-
- private java.util.Vector cachedDeserFactories = new java.util.Vector();
-
- static org.apache.axis.description.OperationDesc[] _operations;
-
- static
- {
- _operations = new org.apache.axis.description.OperationDesc[3];
- _initOperationDesc1();
- }
-
- private static void _initOperationDesc1()
- {
- org.apache.axis.description.OperationDesc oper;
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("getUPIForSequence");
- oper.addParameter(
- new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "sequence"), new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.addParameter(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "searchDatabases"), new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String[].class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.addParameter(
- new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "taxonId"), new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.addParameter(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "onlyActive"), new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.setReturnType(new javax.xml.namespace.QName(
- "http://model.picr.ebi.ac.uk", "UPEntry"));
- oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry.class);
- oper.setReturnQName(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "getUPIForSequenceReturn"));
- oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
- oper.setUse(org.apache.axis.constants.Use.LITERAL);
- _operations[0] = oper;
-
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("getUPIForAccession");
- oper.addParameter(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "accession"), new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.addParameter(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "ac_version"), new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.addParameter(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "searchDatabases"), new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String[].class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.addParameter(
- new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "taxonId"), new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"),
- java.lang.String.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.addParameter(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "onlyActive"), new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
- org.apache.axis.description.ParameterDesc.IN, false, false);
- oper.setReturnType(new javax.xml.namespace.QName(
- "http://model.picr.ebi.ac.uk", "UPEntry"));
- oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry[].class);
- oper.setReturnQName(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "getUPIForAccessionReturn"));
- oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
- oper.setUse(org.apache.axis.constants.Use.LITERAL);
- _operations[1] = oper;
-
- oper = new org.apache.axis.description.OperationDesc();
- oper.setName("getMappedDatabaseNames");
- oper.setReturnType(new javax.xml.namespace.QName(
- "http://www.w3.org/2001/XMLSchema", "string"));
- oper.setReturnClass(java.lang.String[].class);
- oper.setReturnQName(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "mappedDatabases"));
- oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
- oper.setUse(org.apache.axis.constants.Use.LITERAL);
- _operations[2] = oper;
-
- }
-
- public AccessionMapperBindingStub() throws org.apache.axis.AxisFault
- {
- this(null);
- }
-
- public AccessionMapperBindingStub(java.net.URL endpointURL,
- javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
- {
- this(service);
- super.cachedEndpoint = endpointURL;
- }
-
- public AccessionMapperBindingStub(javax.xml.rpc.Service service)
- throws org.apache.axis.AxisFault
- {
- if (service == null)
- {
- super.service = new org.apache.axis.client.Service();
- }
- else
- {
- super.service = service;
- }
- java.lang.Class cls;
- javax.xml.namespace.QName qName;
- java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
- java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
- java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
- java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
- java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
- java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
- java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
- java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
- java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
- java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
- qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
- "UPEntry");
- cachedSerQNames.add(qName);
- cls = uk.ac.ebi.picr.model.UPEntry.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
- "CrossReference");
- cachedSerQNames.add(qName);
- cls = uk.ac.ebi.picr.model.CrossReference.class;
- cachedSerClasses.add(cls);
- cachedSerFactories.add(beansf);
- cachedDeserFactories.add(beandf);
-
- }
-
- protected org.apache.axis.client.Call createCall()
- throws java.rmi.RemoteException
- {
- try
- {
- org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
- .createCall();
- if (super.maintainSessionSet)
- {
- _call.setMaintainSession(super.maintainSession);
- }
- if (super.cachedUsername != null)
- {
- _call.setUsername(super.cachedUsername);
- }
- if (super.cachedPassword != null)
- {
- _call.setPassword(super.cachedPassword);
- }
- if (super.cachedEndpoint != null)
- {
- _call.setTargetEndpointAddress(super.cachedEndpoint);
- }
- if (super.cachedTimeout != null)
- {
- _call.setTimeout(super.cachedTimeout);
- }
- if (super.cachedPortName != null)
- {
- _call.setPortName(super.cachedPortName);
- }
- java.util.Enumeration keys = super.cachedProperties.keys();
- while (keys.hasMoreElements())
- {
- java.lang.String key = (java.lang.String) keys.nextElement();
- _call.setProperty(key, super.cachedProperties.get(key));
- }
- // All the type mapping information is registered
- // when the first call is made.
- // The type mapping information is actually registered in
- // the TypeMappingRegistry of the service, which
- // is the reason why registration is only needed for the first call.
- synchronized (this)
- {
- if (firstCall())
- {
- // must set encoding style before registering serializers
- _call.setEncodingStyle(null);
- for (int i = 0; i < cachedSerFactories.size(); ++i)
- {
- java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
- javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
- .get(i);
- java.lang.Class sf = (java.lang.Class) cachedSerFactories
- .get(i);
- java.lang.Class df = (java.lang.Class) cachedDeserFactories
- .get(i);
- _call.registerTypeMapping(cls, qName, sf, df, false);
- }
- }
- }
- return _call;
- } catch (java.lang.Throwable _t)
- {
- throw new org.apache.axis.AxisFault(
- "Failure trying to get the Call object", _t);
- }
- }
-
- public uk.ac.ebi.picr.model.UPEntry getUPIForSequence(
- java.lang.String sequence, java.lang.String[] searchDatabases,
- java.lang.String taxonId, boolean onlyActive)
- throws java.rmi.RemoteException
- {
- if (super.cachedEndpoint == null)
- {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[0]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("getUPIForSequence");
- _call.setEncodingStyle(null);
- _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
- Boolean.FALSE);
- _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
- Boolean.FALSE);
- _call
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "getUPIForSequence"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call
- .invoke(new java.lang.Object[]
- { sequence, searchDatabases, taxonId,
- new java.lang.Boolean(onlyActive) });
-
- if (_resp instanceof java.rmi.RemoteException)
- {
- throw (java.rmi.RemoteException) _resp;
- }
- else
- {
- extractAttachments(_call);
- try
- {
- return (uk.ac.ebi.picr.model.UPEntry) _resp;
- } catch (java.lang.Exception _exception)
- {
- return (uk.ac.ebi.picr.model.UPEntry) org.apache.axis.utils.JavaUtils
- .convert(_resp, uk.ac.ebi.picr.model.UPEntry.class);
- }
- }
- }
-
- public uk.ac.ebi.picr.model.UPEntry[] getUPIForAccession(
- java.lang.String accession, java.lang.String ac_version,
- java.lang.String[] searchDatabases, java.lang.String taxonId,
- boolean onlyActive) throws java.rmi.RemoteException
- {
- if (super.cachedEndpoint == null)
- {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[1]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("getUPIForAccession");
- _call.setEncodingStyle(null);
- _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
- Boolean.FALSE);
- _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
- Boolean.FALSE);
- _call
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "getUPIForAccession"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- { accession, ac_version, searchDatabases, taxonId,
- new java.lang.Boolean(onlyActive) });
-
- if (_resp instanceof java.rmi.RemoteException)
- {
- throw (java.rmi.RemoteException) _resp;
- }
- else
- {
- extractAttachments(_call);
- try
- {
- return (uk.ac.ebi.picr.model.UPEntry[]) _resp;
- } catch (java.lang.Exception _exception)
- {
- return (uk.ac.ebi.picr.model.UPEntry[]) org.apache.axis.utils.JavaUtils
- .convert(_resp, uk.ac.ebi.picr.model.UPEntry[].class);
- }
- }
- }
-
- public java.lang.String[] getMappedDatabaseNames()
- throws java.rmi.RemoteException
- {
- if (super.cachedEndpoint == null)
- {
- throw new org.apache.axis.NoEndPointException();
- }
- org.apache.axis.client.Call _call = createCall();
- _call.setOperation(_operations[2]);
- _call.setUseSOAPAction(true);
- _call.setSOAPActionURI("getMappedDatabaseNames");
- _call.setEncodingStyle(null);
- _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
- Boolean.FALSE);
- _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
- Boolean.FALSE);
- _call
- .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
- _call.setOperationName(new javax.xml.namespace.QName(
- "http://www.ebi.ac.uk/picr/AccessionMappingService",
- "getMappedDatabaseNames"));
-
- setRequestHeaders(_call);
- setAttachments(_call);
- java.lang.Object _resp = _call.invoke(new java.lang.Object[]
- {});
-
- if (_resp instanceof java.rmi.RemoteException)
- {
- throw (java.rmi.RemoteException) _resp;
- }
- else
- {
- extractAttachments(_call);
- try
- {
- return (java.lang.String[]) _resp;
- } catch (java.lang.Exception _exception)
- {
- return (java.lang.String[]) org.apache.axis.utils.JavaUtils
- .convert(_resp, java.lang.String[].class);
- }
- }
- }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ */
+package uk.ac.ebi.www.picr.AccessionMappingService;
+
+public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
+ implements
+ uk.ac.ebi.www.picr.AccessionMappingService.AccessionMapperInterface
+{
+ private java.util.Vector cachedSerClasses = new java.util.Vector();
+
+ private java.util.Vector cachedSerQNames = new java.util.Vector();
+
+ private java.util.Vector cachedSerFactories = new java.util.Vector();
+
+ private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+ static org.apache.axis.description.OperationDesc[] _operations;
+
+ static
+ {
+ _operations = new org.apache.axis.description.OperationDesc[3];
+ _initOperationDesc1();
+ }
+
+ private static void _initOperationDesc1()
+ {
+ org.apache.axis.description.OperationDesc oper;
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getUPIForSequence");
+ oper.addParameter(
+ new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "sequence"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "searchDatabases"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String[].class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(
+ new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "taxonId"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "onlyActive"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "http://model.picr.ebi.ac.uk", "UPEntry"));
+ oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry.class);
+ oper.setReturnQName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "getUPIForSequenceReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
+ oper.setUse(org.apache.axis.constants.Use.LITERAL);
+ _operations[0] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getUPIForAccession");
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "accession"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "ac_version"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "searchDatabases"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String[].class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(
+ new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "taxonId"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"),
+ java.lang.String.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.addParameter(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "onlyActive"), new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
+ org.apache.axis.description.ParameterDesc.IN, false, false);
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "http://model.picr.ebi.ac.uk", "UPEntry"));
+ oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry[].class);
+ oper.setReturnQName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "getUPIForAccessionReturn"));
+ oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
+ oper.setUse(org.apache.axis.constants.Use.LITERAL);
+ _operations[1] = oper;
+
+ oper = new org.apache.axis.description.OperationDesc();
+ oper.setName("getMappedDatabaseNames");
+ oper.setReturnType(new javax.xml.namespace.QName(
+ "http://www.w3.org/2001/XMLSchema", "string"));
+ oper.setReturnClass(java.lang.String[].class);
+ oper.setReturnQName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "mappedDatabases"));
+ oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
+ oper.setUse(org.apache.axis.constants.Use.LITERAL);
+ _operations[2] = oper;
+
+ }
+
+ public AccessionMapperBindingStub() throws org.apache.axis.AxisFault
+ {
+ this(null);
+ }
+
+ public AccessionMapperBindingStub(java.net.URL endpointURL,
+ javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
+ {
+ this(service);
+ super.cachedEndpoint = endpointURL;
+ }
+
+ public AccessionMapperBindingStub(javax.xml.rpc.Service service)
+ throws org.apache.axis.AxisFault
+ {
+ if (service == null)
+ {
+ super.service = new org.apache.axis.client.Service();
+ }
+ else
+ {
+ super.service = service;
+ }
+ java.lang.Class cls;
+ javax.xml.namespace.QName qName;
+ java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+ java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+ java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+ java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+ java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+ java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+ java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+ java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+ java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
+ java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
+ qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
+ "UPEntry");
+ cachedSerQNames.add(qName);
+ cls = uk.ac.ebi.picr.model.UPEntry.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
+ "CrossReference");
+ cachedSerQNames.add(qName);
+ cls = uk.ac.ebi.picr.model.CrossReference.class;
+ cachedSerClasses.add(cls);
+ cachedSerFactories.add(beansf);
+ cachedDeserFactories.add(beandf);
+
+ }
+
+ protected org.apache.axis.client.Call createCall()
+ throws java.rmi.RemoteException
+ {
+ try
+ {
+ org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
+ .createCall();
+ if (super.maintainSessionSet)
+ {
+ _call.setMaintainSession(super.maintainSession);
+ }
+ if (super.cachedUsername != null)
+ {
+ _call.setUsername(super.cachedUsername);
+ }
+ if (super.cachedPassword != null)
+ {
+ _call.setPassword(super.cachedPassword);
+ }
+ if (super.cachedEndpoint != null)
+ {
+ _call.setTargetEndpointAddress(super.cachedEndpoint);
+ }
+ if (super.cachedTimeout != null)
+ {
+ _call.setTimeout(super.cachedTimeout);
+ }
+ if (super.cachedPortName != null)
+ {
+ _call.setPortName(super.cachedPortName);
+ }
+ java.util.Enumeration keys = super.cachedProperties.keys();
+ while (keys.hasMoreElements())
+ {
+ java.lang.String key = (java.lang.String) keys.nextElement();
+ _call.setProperty(key, super.cachedProperties.get(key));
+ }
+ // All the type mapping information is registered
+ // when the first call is made.
+ // The type mapping information is actually registered in
+ // the TypeMappingRegistry of the service, which
+ // is the reason why registration is only needed for the first call.
+ synchronized (this)
+ {
+ if (firstCall())
+ {
+ // must set encoding style before registering serializers
+ _call.setEncodingStyle(null);
+ for (int i = 0; i < cachedSerFactories.size(); ++i)
+ {
+ java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+ javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
+ .get(i);
+ java.lang.Class sf = (java.lang.Class) cachedSerFactories
+ .get(i);
+ java.lang.Class df = (java.lang.Class) cachedDeserFactories
+ .get(i);
+ _call.registerTypeMapping(cls, qName, sf, df, false);
+ }
+ }
+ }
+ return _call;
+ } catch (java.lang.Throwable _t)
+ {
+ throw new org.apache.axis.AxisFault(
+ "Failure trying to get the Call object", _t);
+ }
+ }
+
+ public uk.ac.ebi.picr.model.UPEntry getUPIForSequence(
+ java.lang.String sequence, java.lang.String[] searchDatabases,
+ java.lang.String taxonId, boolean onlyActive)
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[0]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("getUPIForSequence");
+ _call.setEncodingStyle(null);
+ _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
+ Boolean.FALSE);
+ _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
+ Boolean.FALSE);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "getUPIForSequence"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call
+ .invoke(new java.lang.Object[]
+ { sequence, searchDatabases, taxonId,
+ new java.lang.Boolean(onlyActive) });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (uk.ac.ebi.picr.model.UPEntry) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (uk.ac.ebi.picr.model.UPEntry) org.apache.axis.utils.JavaUtils
+ .convert(_resp, uk.ac.ebi.picr.model.UPEntry.class);
+ }
+ }
+ }
+
+ public uk.ac.ebi.picr.model.UPEntry[] getUPIForAccession(
+ java.lang.String accession, java.lang.String ac_version,
+ java.lang.String[] searchDatabases, java.lang.String taxonId,
+ boolean onlyActive) throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[1]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("getUPIForAccession");
+ _call.setEncodingStyle(null);
+ _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
+ Boolean.FALSE);
+ _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
+ Boolean.FALSE);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "getUPIForAccession"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ { accession, ac_version, searchDatabases, taxonId,
+ new java.lang.Boolean(onlyActive) });
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (uk.ac.ebi.picr.model.UPEntry[]) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (uk.ac.ebi.picr.model.UPEntry[]) org.apache.axis.utils.JavaUtils
+ .convert(_resp, uk.ac.ebi.picr.model.UPEntry[].class);
+ }
+ }
+ }
+
+ public java.lang.String[] getMappedDatabaseNames()
+ throws java.rmi.RemoteException
+ {
+ if (super.cachedEndpoint == null)
+ {
+ throw new org.apache.axis.NoEndPointException();
+ }
+ org.apache.axis.client.Call _call = createCall();
+ _call.setOperation(_operations[2]);
+ _call.setUseSOAPAction(true);
+ _call.setSOAPActionURI("getMappedDatabaseNames");
+ _call.setEncodingStyle(null);
+ _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
+ Boolean.FALSE);
+ _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
+ Boolean.FALSE);
+ _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+ _call.setOperationName(new javax.xml.namespace.QName(
+ "http://www.ebi.ac.uk/picr/AccessionMappingService",
+ "getMappedDatabaseNames"));
+
+ setRequestHeaders(_call);
+ setAttachments(_call);
+ java.lang.Object _resp = _call.invoke(new java.lang.Object[]
+ {});
+
+ if (_resp instanceof java.rmi.RemoteException)
+ {
+ throw (java.rmi.RemoteException) _resp;
+ }
+ else
+ {
+ extractAttachments(_call);
+ try
+ {
+ return (java.lang.String[]) _resp;
+ } catch (java.lang.Exception _exception)
+ {
+ return (java.lang.String[]) org.apache.axis.utils.JavaUtils
+ .convert(_resp, java.lang.String[].class);
+ }
+ }
+ }
+
+}