X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fuk%2Fac%2Fvamsas%2Fclient%2FClientDocument.java;h=992555f353b4a7ee82647ae24dcc4ae62af8c1e6;hb=844ccad5a3fcbedec17b2af66d460f31abc7cff1;hp=49f949c630e7f4e887cb0dc3defc7625e39d0de1;hpb=6f33f705957d674dc2ab6c994a6ea87f7a91f40f;p=vamsas.git

diff --git a/src/uk/ac/vamsas/client/ClientDocument.java b/src/uk/ac/vamsas/client/ClientDocument.java
index 49f949c..992555f 100644
--- a/src/uk/ac/vamsas/client/ClientDocument.java
+++ b/src/uk/ac/vamsas/client/ClientDocument.java
@@ -1,5 +1,23 @@
 /*
- *
+ * This file is part of the Vamsas Client version 0.1. 
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ *  Andrew Waterhouse and Dominik Lindner.
+ * 
+ * Earlier versions have also been incorporated into Jalview version 2.4 
+ * since 2008, and TOPALi version 2 since 2007.
+ * 
+ * The Vamsas Client is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *  
+ * The Vamsas Client is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
  */
 package uk.ac.vamsas.client;
 
@@ -11,43 +29,46 @@ import org.apache.commons.logging.LogFactory;
 import uk.ac.vamsas.objects.core.VAMSAS;
 
 /**
- * skeleton abstract class to allow client implementations 
- * access to vamsas.client.Vobject registry mechanism.
+ * skeleton abstract class to allow client implementations access to
+ * vamsas.client.Vobject registry mechanism.
  */
 public abstract class ClientDocument implements IClientDocument {
   static Log log = LogFactory.getLog(ClientDocument.class);
-  
+
   /**
    * collection of uk.ac.vamsas.client.Vobject references
    */
   protected Hashtable vamsasObjects;
+
   protected IVorbaIdFactory vorbafactory;
-  
+
   protected ClientDocument(Hashtable objects, IVorbaIdFactory factory) {
     vamsasObjects = objects;
     vorbafactory = factory;
   }
-  
+
   /**
    * @see IClientHandle.registerObject(Vobject unregistered)
    */
   protected VorbaId _registerObject(Vobject unregistered) {
-    // be ultra safe here because the user may be trying to mix different factories
-    if (unregistered.__vorba==null)
-        unregistered.__vorba = vorbafactory;
-    else
-      if (unregistered.__vorba!=vorbafactory) {
-        // LATER: decide if this is allowed - it isn't for the moment.
-        log.error("Attempt to overwrite info in a registered vorba Vobject (under a different IVorbaIdFactory) ! - Implementation fix needed.");
-        return null;
-      } else {
-        // probably didn't need to call registerObject.
-        log.debug("Redundant call to registerObject");
-      }
+    // be ultra safe here because the user may be trying to mix different
+    // factories
+    if (unregistered.__vorba == null)
+      unregistered.__vorba = vorbafactory;
+    else if (unregistered.__vorba != vorbafactory) {
+      // LATER: decide if this is allowed - it isn't for the moment.
+      log
+          .error("Attempt to overwrite info in a registered vorba Vobject (under a different IVorbaIdFactory) ! - Implementation fix needed.");
+      return null;
+    } else {
+      // probably didn't need to call registerObject.
+      log.debug("Redundant call to registerObject");
+    }
     // TODO: add default provenance.
     // TODO: decide if we need to do call __ensure_instance_ids here
-    // TODO: check if __ensure_instance_ids works correctly with new 'visit flag' mechanism
-    unregistered.__ensure_instance_ids(); // call cascade method here : 
+    // TODO: check if __ensure_instance_ids works correctly with new 'visit
+    // flag' mechanism
+    unregistered.__ensure_instance_ids(); // call cascade method here :
     return unregistered.getVorbaId();
   }
 }