X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fuk%2Fac%2Fvamsas%2Fobjects%2Fcore%2Fdescriptors%2FDataSetDescriptor.java;h=f677adf2218fc29997dfdf3b7a0f68473e59d961;hb=4aeaba257ad7e3206158565b356da7e4b15bf0a2;hp=01b48876961602387e12ed628cbec0ebf5397956;hpb=ac12127b5cf22bb34b6042e543d506894164a94c;p=vamsas.git

diff --git a/src/uk/ac/vamsas/objects/core/descriptors/DataSetDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/DataSetDescriptor.java
index 01b4887..f677adf 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/DataSetDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/DataSetDescriptor.java
@@ -45,11 +45,6 @@ public class DataSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescri
      */
     private java.lang.String _xmlName;
 
-    /**
-     * Field _identity.
-     */
-    private org.exolab.castor.xml.XMLFieldDescriptor _identity;
-
 
       //----------------/
      //- Constructors -/
@@ -70,7 +65,7 @@ public class DataSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescri
         
         //-- _id
         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
-        this._identity = desc;
+        super.setIdentity(desc);
         handler = new org.exolab.castor.xml.XMLFieldHandler() {
             public java.lang.Object getValue( java.lang.Object object ) 
                 throws IllegalStateException
@@ -149,6 +144,48 @@ public class DataSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescri
         { //-- local scope
         }
         desc.setValidator(fieldValidator);
+        //-- _sequenceMappingList
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.SequenceMapping.class, "_sequenceMappingList", "sequenceMapping", org.exolab.castor.xml.NodeType.Element);
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {
+            public java.lang.Object getValue( java.lang.Object object ) 
+                throws IllegalStateException
+            {
+                DataSet target = (DataSet) object;
+                return target.getSequenceMapping();
+            }
+            public void setValue( java.lang.Object object, java.lang.Object value) 
+                throws IllegalStateException, IllegalArgumentException
+            {
+                try {
+                    DataSet target = (DataSet) object;
+                    target.addSequenceMapping( (uk.ac.vamsas.objects.core.SequenceMapping) value);
+                } catch (java.lang.Exception ex) {
+                    throw new IllegalStateException(ex.toString());
+                }
+            }
+            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
+                try {
+                    DataSet target = (DataSet) object;
+                    target.removeAllSequenceMapping();
+                } catch (java.lang.Exception ex) {
+                    throw new IllegalStateException(ex.toString());
+                }
+            }
+            public java.lang.Object newInstance(java.lang.Object parent) {
+                return new uk.ac.vamsas.objects.core.SequenceMapping();
+            }
+        };
+        desc.setHandler(handler);
+        desc.setNameSpaceURI("http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes");
+        desc.setMultivalued(true);
+        addFieldDescriptor(desc);
+        
+        //-- validation code for: _sequenceMappingList
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();
+        fieldValidator.setMinOccurs(0);
+        { //-- local scope
+        }
+        desc.setValidator(fieldValidator);
         //-- _dataSetAnnotationsList
         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.DataSetAnnotations.class, "_dataSetAnnotationsList", "DataSetAnnotations", org.exolab.castor.xml.NodeType.Element);
         handler = new org.exolab.castor.xml.XMLFieldHandler() {
@@ -335,7 +372,7 @@ public class DataSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescri
      */
     public org.exolab.castor.mapping.FieldDescriptor getIdentity(
     ) {
-        return _identity;
+        return super.getIdentity();
     }
 
     /**