X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fuk%2Fac%2Fvamsas%2Fobjects%2Futils%2FDocumentStuff.java;h=14d764d219403041f754b517150be29eed878eec;hb=844ccad5a3fcbedec17b2af66d460f31abc7cff1;hp=01df0615c0af20a6f2b73d5624f10f390da54681;hpb=6f33f705957d674dc2ab6c994a6ea87f7a91f40f;p=vamsas.git

diff --git a/src/uk/ac/vamsas/objects/utils/DocumentStuff.java b/src/uk/ac/vamsas/objects/utils/DocumentStuff.java
index 01df061..14d764d 100644
--- a/src/uk/ac/vamsas/objects/utils/DocumentStuff.java
+++ b/src/uk/ac/vamsas/objects/utils/DocumentStuff.java
@@ -1,35 +1,57 @@
-package uk.ac.vamsas.objects.utils;
-
-
-import uk.ac.vamsas.objects.core.*;
-import uk.ac.vamsas.objects.utils.document.VersionEntries;
-
-/**
- * various vamsas-client independent helpers 
- * for creating and manipulating the vamsasDocument Vobject
- * @author jimp
- *
- */
-public class DocumentStuff {
-  public static VamsasDocument newVamsasDocument(VAMSAS root[], String version) {
-    return newVamsasDocument(root, ProvenanceStuff.newProvenance(
-      "AUTO:org.vamsas.DocumentStuff.newVamsasDocument", 
-      "Vamsas Document created"),
-      version);
-  }
-  public static VamsasDocument newVamsasDocument(VAMSAS root[]) {
-    return newVamsasDocument(root, ProvenanceStuff.newProvenance(
-      "AUTO:org.vamsas.DocumentStuff.newVamsasDocument", 
-      "Vamsas Document created"),
-      VersionEntries.latestVersion());
-  }
-  public static VamsasDocument newVamsasDocument(VAMSAS root[], Provenance p, String version) {
-    VamsasDocument doc = new VamsasDocument();
-    for (int r=0; r<root.length; r++) {
-      doc.addVAMSAS(root[r]);
-    }
-    doc.setProvenance(p);
-    doc.setVersion(version);
-    return doc;
-  }
-}
+/*
+ * This file is part of the Vamsas Client version 0.1. 
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ *  Andrew Waterhouse and Dominik Lindner.
+ * 
+ * Earlier versions have also been incorporated into Jalview version 2.4 
+ * since 2008, and TOPALi version 2 since 2007.
+ * 
+ * The Vamsas Client is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *  
+ * The Vamsas Client is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+ */
+package uk.ac.vamsas.objects.utils;
+
+import uk.ac.vamsas.objects.core.*;
+import uk.ac.vamsas.objects.utils.document.VersionEntries;
+
+/**
+ * various vamsas-client independent helpers for creating and manipulating the
+ * vamsasDocument Vobject
+ * 
+ * @author jimp
+ * 
+ */
+public class DocumentStuff {
+  public static VamsasDocument newVamsasDocument(VAMSAS root[], String version) {
+    return newVamsasDocument(root, ProvenanceStuff.newProvenance(
+        "AUTO:org.vamsas.DocumentStuff.newVamsasDocument",
+        "Vamsas Document created"), version);
+  }
+
+  public static VamsasDocument newVamsasDocument(VAMSAS root[]) {
+    return newVamsasDocument(root, ProvenanceStuff.newProvenance(
+        "AUTO:org.vamsas.DocumentStuff.newVamsasDocument",
+        "Vamsas Document created"), VersionEntries.latestVersion());
+  }
+
+  public static VamsasDocument newVamsasDocument(VAMSAS root[], Provenance p,
+      String version) {
+    VamsasDocument doc = new VamsasDocument();
+    for (int r = 0; r < root.length; r++) {
+      doc.addVAMSAS(root[r]);
+    }
+    doc.setProvenance(p);
+    doc.setVersion(version);
+    return doc;
+  }
+}