X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fvamsas%2Fobjects%2Fsimple%2FSequenceSet.java;h=03b4f7e82435453be9d5a27d6ee2f7077da37ba5;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=f7fc39e4ff5716932e8208b99be3118c3ffcd072;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git

diff --git a/src/vamsas/objects/simple/SequenceSet.java b/src/vamsas/objects/simple/SequenceSet.java
index f7fc39e..03b4f7e 100755
--- a/src/vamsas/objects/simple/SequenceSet.java
+++ b/src/vamsas/objects/simple/SequenceSet.java
@@ -1,101 +1,113 @@
-/**
- * SequenceSet.java
- *
- * This file was auto-generated from WSDL
- * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
- */
-
 /*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/
-
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package vamsas.objects.simple;
 
-public class SequenceSet  implements java.io.Serializable {
-    private vamsas.objects.simple.Sequence[] seqs;
+public class SequenceSet implements java.io.Serializable
+{
+  private vamsas.objects.simple.Sequence[] seqs;
 
-    public SequenceSet() {
-    }
+  public SequenceSet()
+  {
+  }
 
-    public SequenceSet(
-           vamsas.objects.simple.Sequence[] seqs) {
-           this.seqs = seqs;
-    }
+  public SequenceSet(vamsas.objects.simple.Sequence[] seqs)
+  {
+    this.seqs = seqs;
+  }
 
+  /**
+   * Gets the seqs value for this SequenceSet.
+   * 
+   * @return seqs
+   */
+  public vamsas.objects.simple.Sequence[] getSeqs()
+  {
+    return seqs;
+  }
 
-    /**
-     * Gets the seqs value for this SequenceSet.
-     *
-     * @return seqs
-     */
-    public vamsas.objects.simple.Sequence[] getSeqs() {
-        return seqs;
-    }
+  /**
+   * Sets the seqs value for this SequenceSet.
+   * 
+   * @param seqs
+   */
+  public void setSeqs(vamsas.objects.simple.Sequence[] seqs)
+  {
+    this.seqs = seqs;
+  }
 
+  private java.lang.Object __equalsCalc = null;
 
-    /**
-     * Sets the seqs value for this SequenceSet.
-     *
-     * @param seqs
-     */
-    public void setSeqs(vamsas.objects.simple.Sequence[] seqs) {
-        this.seqs = seqs;
+  @Override
+  public synchronized boolean equals(java.lang.Object obj)
+  {
+    if (obj == null)
+    {
+      return false;
     }
-
-    private java.lang.Object __equalsCalc = null;
-    public synchronized boolean equals(java.lang.Object obj) {
-        if (!(obj instanceof SequenceSet)) return false;
-        SequenceSet other = (SequenceSet) obj;
-        if (obj == null) return false;
-        if (this == obj) return true;
-        if (__equalsCalc != null) {
-            return (__equalsCalc == obj);
-        }
-        __equalsCalc = obj;
-        boolean _equals;
-        _equals = true &&
-            ((this.seqs==null && other.getSeqs()==null) ||
-             (this.seqs!=null &&
-              java.util.Arrays.equals(this.seqs, other.getSeqs())));
-        __equalsCalc = null;
-        return _equals;
+    if (!(obj instanceof SequenceSet))
+    {
+      return false;
+    }
+    SequenceSet other = (SequenceSet) obj;
+    if (this == obj)
+    {
+      return true;
+    }
+    if (__equalsCalc != null)
+    {
+      return (__equalsCalc == obj);
     }
+    __equalsCalc = obj;
+    boolean _equals;
+    _equals = true && ((this.seqs == null && other.getSeqs() == null)
+            || (this.seqs != null && java.util.Arrays.equals(this.seqs,
+                    other.getSeqs())));
+    __equalsCalc = null;
+    return _equals;
+  }
 
-    private boolean __hashCodeCalc = false;
-    public synchronized int hashCode() {
-        if (__hashCodeCalc) {
-            return 0;
-        }
-        __hashCodeCalc = true;
-        int _hashCode = 1;
-        if (getSeqs() != null) {
-            for (int i=0;
-                 i<java.lang.reflect.Array.getLength(getSeqs());
-                 i++) {
-                java.lang.Object obj = java.lang.reflect.Array.get(getSeqs(), i);
-                if (obj != null &&
-                    !obj.getClass().isArray()) {
-                    _hashCode += obj.hashCode();
-                }
-            }
+  private boolean __hashCodeCalc = false;
+
+  @Override
+  public synchronized int hashCode()
+  {
+    if (__hashCodeCalc)
+    {
+      return 0;
+    }
+    __hashCodeCalc = true;
+    int _hashCode = 1;
+    if (getSeqs() != null)
+    {
+      for (int i = 0; i < java.lang.reflect.Array.getLength(getSeqs()); i++)
+      {
+        java.lang.Object obj = java.lang.reflect.Array.get(getSeqs(), i);
+        if (obj != null && !obj.getClass().isArray())
+        {
+          _hashCode += obj.hashCode();
         }
-        __hashCodeCalc = false;
-        return _hashCode;
+      }
     }
+    __hashCodeCalc = false;
+    return _hashCode;
+  }
 
 }