X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src2%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2FnaView%2FBase.java;fp=src2%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2FnaView%2FBase.java;h=bb8e0f8a7909dffbc2b472aab9c0d8e0b78f09db;hb=665d2c2f4c1310e6985b93b7c2c8a8eec2fa9086;hp=0000000000000000000000000000000000000000;hpb=0e684f72690bd6532272a39ab6c188a27559fd09;p=jalview.git diff --git a/src2/fr/orsay/lri/varna/models/naView/Base.java b/src2/fr/orsay/lri/varna/models/naView/Base.java new file mode 100644 index 0000000..bb8e0f8 --- /dev/null +++ b/src2/fr/orsay/lri/varna/models/naView/Base.java @@ -0,0 +1,66 @@ +/* + VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases. + Copyright (C) 2008 Kevin Darty, Alain Denise and Yann Ponty. + electronic mail : Yann.Ponty@lri.fr + paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France + + This file is part of VARNA version 3.1. + VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License + as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + + VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; + without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. + See the GNU General Public License for more details. + + You should have received a copy of the GNU General Public License along with VARNA version 3.1. + If not, see http://www.gnu.org/licenses. + */ +package fr.orsay.lri.varna.models.naView; + +public class Base { + private int mate; + private double x, y; + private boolean extracted; + private Region region = new Region(); + + public int getMate() { + return mate; + } + + public void setMate(int mate) { + this.mate = mate; + } + + public double getX() { + return x; + } + + public void setX(double x) { + //System.out.println(" Base.setX()"); + this.x = x; + } + + public double getY() { + return y; + } + + public void setY(double y) { + this.y = y; + } + + public boolean isExtracted() { + return extracted; + } + + public void setExtracted(boolean extracted) { + this.extracted = extracted; + } + + public Region getRegion() { + return region; + } + + public void setRegion(Region region) { + this.region = region; + } +}