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diff --git a/srcjar/fr/orsay/lri/varna/exceptions/MappingException.java b/srcjar/fr/orsay/lri/varna/exceptions/MappingException.java
new file mode 100644
index 0000000..bc31021
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+++ b/srcjar/fr/orsay/lri/varna/exceptions/MappingException.java
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+/*
+ VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
+ Copyright (C) 2008  Kevin Darty, Alain Denise and Yann Ponty.
+ electronic mail : Yann.Ponty@lri.fr
+ paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
+
+ This file is part of VARNA version 3.1.
+ VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
+ as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+
+ VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
+ without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+ See the GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along with VARNA version 3.1.
+ If not, see http://www.gnu.org/licenses.
+ */
+package fr.orsay.lri.varna.exceptions;
+
+public class MappingException extends Exception {
+	private static final long serialVersionUID = 1L;
+
+	public static final int MULTIPLE_PARTNERS_DEFINITION_ATTEMPT = 1;
+	public static final int BAD_ALIGNMENT_INPUT = 2;
+	public static final int CUSTOM_MESSAGE = 3;
+
+	private String _errorMessage;
+	private int _type;
+
+	public MappingException(String errorMessage) {
+		_errorMessage = errorMessage;
+		_type = CUSTOM_MESSAGE;
+	}
+
+	public MappingException(int type) {
+		_type = type;
+	}
+
+	public String getMessage() {
+		switch (_type) {
+		case MULTIPLE_PARTNERS_DEFINITION_ATTEMPT:
+			return "Mapping error: Attempt to define multiple partners for a base-pair";
+		case BAD_ALIGNMENT_INPUT:
+			return "Mapping error: Bad input alignment";
+
+		case CUSTOM_MESSAGE:
+			return _errorMessage;
+		default:
+			return "Mapping error: Type is unknown.";
+		}
+	}
+
+}