X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=srcjar%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Ftemplates%2FDrawRNATemplateMethod.java;fp=srcjar%2Ffr%2Forsay%2Flri%2Fvarna%2Fmodels%2Ftemplates%2FDrawRNATemplateMethod.java;h=9fd5f67a87659ae221a9b8eb4e97a57cb40173db;hb=2d6292c0377bc6b773c6844a45d3f2c5fac352c7;hp=0000000000000000000000000000000000000000;hpb=954af328a2a6a0055572cd1a09ee035301222574;p=jalview.git

diff --git a/srcjar/fr/orsay/lri/varna/models/templates/DrawRNATemplateMethod.java b/srcjar/fr/orsay/lri/varna/models/templates/DrawRNATemplateMethod.java
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index 0000000..9fd5f67
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+++ b/srcjar/fr/orsay/lri/varna/models/templates/DrawRNATemplateMethod.java
@@ -0,0 +1,38 @@
+/**
+ * File written by Raphael Champeimont
+ * UMR 7238 Genomique des Microorganismes
+ */
+package fr.orsay.lri.varna.models.templates;
+
+/**
+ * What to do in case some helices are of a different length
+ * in the template and the actual helix.
+ * Possibles values are:
+ * 0 - No adjustment is done.
+ *     A longer than expected helix might bump into an other helix.
+ * 1 - Scaling factors (actual length / template length) are calculated,
+ *     the maximum scaling factor L is extracted, then all helix positions
+ *     are multiplied by L. 
+ * 2 - Same as 1, but L is computed as the minimum value such that there
+ *     are no backbone intersections.
+ */
+public enum DrawRNATemplateMethod {
+	NOADJUST("No Adjust"), MAXSCALINGFACTOR("Max Scaling"), NOINTERSECT("Non-crossing"), HELIXTRANSLATE("Helix Translation");
+	
+	String _msg;
+	
+	public static DrawRNATemplateMethod getDefault() {
+		return HELIXTRANSLATE;
+	}
+	
+
+	public String toString()
+	{
+		return _msg;
+	}
+	
+	private DrawRNATemplateMethod(String msg)
+	{
+		_msg = msg;
+	}
+}
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